miRNA display CGI


Results 21 - 40 of 275 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19242 5' -56.9 NC_004684.1 + 61358 0.66 0.6891
Target:  5'- gGGcCGCGAgGCGCUGGCG-GCCUaaaGGCc -3'
miRNA:   3'- -UC-GUGUUgUGUGGCCGCuUGGGg--CUG- -5'
19242 5' -56.9 NC_004684.1 + 15282 0.66 0.6891
Target:  5'- uGCGCggUGCACCuGCuGGGCCUgguCGACg -3'
miRNA:   3'- uCGUGuuGUGUGGcCG-CUUGGG---GCUG- -5'
19242 5' -56.9 NC_004684.1 + 25165 0.66 0.6891
Target:  5'- cGCGCcgguGCcgACACCGGCGGccACgUCGGCc -3'
miRNA:   3'- uCGUGu---UG--UGUGGCCGCU--UGgGGCUG- -5'
19242 5' -56.9 NC_004684.1 + 40042 0.66 0.6891
Target:  5'- gGGCAU--CAUGCCGGU--GCCCaCGGCg -3'
miRNA:   3'- -UCGUGuuGUGUGGCCGcuUGGG-GCUG- -5'
19242 5' -56.9 NC_004684.1 + 41891 0.66 0.6891
Target:  5'- cGCgACAugaACGCGCUGGCcGACCggaCGACa -3'
miRNA:   3'- uCG-UGU---UGUGUGGCCGcUUGGg--GCUG- -5'
19242 5' -56.9 NC_004684.1 + 20235 0.66 0.6891
Target:  5'- uGCGCcuGGCGCGCCGGUacuACuUCCGGCc -3'
miRNA:   3'- uCGUG--UUGUGUGGCCGcu-UG-GGGCUG- -5'
19242 5' -56.9 NC_004684.1 + 22006 0.66 0.6891
Target:  5'- aGGC-CAugGgGCCGGUgcucgccgaccuGAACCgCGACa -3'
miRNA:   3'- -UCGuGUugUgUGGCCG------------CUUGGgGCUG- -5'
19242 5' -56.9 NC_004684.1 + 40112 0.66 0.6891
Target:  5'- uGGC-CGuaGCggGCGCUGGCG-GCCUCGGCa -3'
miRNA:   3'- -UCGuGU--UG--UGUGGCCGCuUGGGGCUG- -5'
19242 5' -56.9 NC_004684.1 + 7325 0.66 0.6891
Target:  5'- cGCACGggccgccgggccGCGCGCCacgaguGCGAGgCCUGGCa -3'
miRNA:   3'- uCGUGU------------UGUGUGGc-----CGCUUgGGGCUG- -5'
19242 5' -56.9 NC_004684.1 + 59070 0.66 0.686974
Target:  5'- uGGCGC-GCACcucuuCCGGCGucagcgccaaccACUCCGGCa -3'
miRNA:   3'- -UCGUGuUGUGu----GGCCGCu-----------UGGGGCUG- -5'
19242 5' -56.9 NC_004684.1 + 58303 0.66 0.68591
Target:  5'- uGGUgaugACAGCuCACCGGCGAcgccgggucauggcGCgCCCGGu -3'
miRNA:   3'- -UCG----UGUUGuGUGGCCGCU--------------UG-GGGCUg -5'
19242 5' -56.9 NC_004684.1 + 15977 0.66 0.68591
Target:  5'- aGGC-CGugACACCGGCaGAggccgaaacguccgGCUCCGGg -3'
miRNA:   3'- -UCGuGUugUGUGGCCG-CU--------------UGGGGCUg -5'
19242 5' -56.9 NC_004684.1 + 42666 0.66 0.67845
Target:  5'- uGGCGCAGCACGCCcagcucGGUGuugucguCgCUGACg -3'
miRNA:   3'- -UCGUGUUGUGUGG------CCGCuu-----GgGGCUG- -5'
19242 5' -56.9 NC_004684.1 + 23680 0.66 0.67845
Target:  5'- aGGCAuacCAGCGCAUCcaagcugcccaGGCGGugucggACCUCGACg -3'
miRNA:   3'- -UCGU---GUUGUGUGG-----------CCGCU------UGGGGCUG- -5'
19242 5' -56.9 NC_004684.1 + 21624 0.66 0.67845
Target:  5'- cGGUAC--CGCACCGGCGuGACCaaGAa -3'
miRNA:   3'- -UCGUGuuGUGUGGCCGC-UUGGggCUg -5'
19242 5' -56.9 NC_004684.1 + 17359 0.66 0.67845
Target:  5'- gAGC-CAG-GCACCGGCcacgcuGCCgCCGACg -3'
miRNA:   3'- -UCGuGUUgUGUGGCCGcu----UGG-GGCUG- -5'
19242 5' -56.9 NC_004684.1 + 40426 0.66 0.67845
Target:  5'- -cUugGACGCACCGGCcuuggucagcGGugCCCaGGCg -3'
miRNA:   3'- ucGugUUGUGUGGCCG----------CUugGGG-CUG- -5'
19242 5' -56.9 NC_004684.1 + 41599 0.66 0.67845
Target:  5'- cAGUugGugacgaACACCGGCGuGCCgCCGGu -3'
miRNA:   3'- -UCGugUug----UGUGGCCGCuUGG-GGCUg -5'
19242 5' -56.9 NC_004684.1 + 8767 0.66 0.67845
Target:  5'- cAGCGCGGCACcaGCCGccaCGGGCCgUCGAUc -3'
miRNA:   3'- -UCGUGUUGUG--UGGCc--GCUUGG-GGCUG- -5'
19242 5' -56.9 NC_004684.1 + 58726 0.66 0.677382
Target:  5'- aGGCACcuggcCGCACCGggcacgcaugaucGCGuuGCCCUGGCg -3'
miRNA:   3'- -UCGUGuu---GUGUGGC-------------CGCu-UGGGGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.