miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19243 3' -58.5 NC_004684.1 + 57068 1.09 0.000583
Target:  5'- gUGGCAGGCACCACCUGGAACGAGGUGg -3'
miRNA:   3'- -ACCGUCCGUGGUGGACCUUGCUCCAC- -5'
19243 3' -58.5 NC_004684.1 + 38815 0.78 0.107525
Target:  5'- cGGCAGGCAgCCGCCgcacaccGGuGGCGGGGUGu -3'
miRNA:   3'- aCCGUCCGU-GGUGGa------CC-UUGCUCCAC- -5'
19243 3' -58.5 NC_004684.1 + 1984 0.75 0.176698
Target:  5'- cUGGCGcgcgaaccgcguucuGGCAgCGCCUGGGugGGGGUc -3'
miRNA:   3'- -ACCGU---------------CCGUgGUGGACCUugCUCCAc -5'
19243 3' -58.5 NC_004684.1 + 46257 0.74 0.193702
Target:  5'- gUGcGCGGuGaCACCGCCggacacgUGGAACGGGGUGa -3'
miRNA:   3'- -AC-CGUC-C-GUGGUGG-------ACCUUGCUCCAC- -5'
19243 3' -58.5 NC_004684.1 + 17542 0.74 0.209943
Target:  5'- gUGGUcgccuaccAGG-ACCGCCUGGA-CGAGGUGc -3'
miRNA:   3'- -ACCG--------UCCgUGGUGGACCUuGCUCCAC- -5'
19243 3' -58.5 NC_004684.1 + 30669 0.74 0.209943
Target:  5'- gGuGCGGGCauACCACCUGGAagGCGAcacgcucacgccGGUGg -3'
miRNA:   3'- aC-CGUCCG--UGGUGGACCU--UGCU------------CCAC- -5'
19243 3' -58.5 NC_004684.1 + 64036 0.72 0.243481
Target:  5'- aGGCgugcuGGaGCACCGCCUGGAACGccgaaugcuucuGGUGc -3'
miRNA:   3'- aCCG-----UC-CGUGGUGGACCUUGCu-----------CCAC- -5'
19243 3' -58.5 NC_004684.1 + 17289 0.72 0.277231
Target:  5'- aGGUggGGGCcaGCCGCCUGGu-CGuGGUGg -3'
miRNA:   3'- aCCG--UCCG--UGGUGGACCuuGCuCCAC- -5'
19243 3' -58.5 NC_004684.1 + 2272 0.71 0.283438
Target:  5'- cGGCGGGCAUUgccgccaGCCUGGGccACGAcgcGGUGc -3'
miRNA:   3'- aCCGUCCGUGG-------UGGACCU--UGCU---CCAC- -5'
19243 3' -58.5 NC_004684.1 + 58711 0.71 0.284135
Target:  5'- aGGCGGucuGCGCCACCUGGAACa----- -3'
miRNA:   3'- aCCGUC---CGUGGUGGACCUUGcuccac -5'
19243 3' -58.5 NC_004684.1 + 6864 0.71 0.284135
Target:  5'- gUGGUGGuGCugCACuggcuCUGGGGCGAGGUc -3'
miRNA:   3'- -ACCGUC-CGugGUG-----GACCUUGCUCCAc -5'
19243 3' -58.5 NC_004684.1 + 12057 0.71 0.305658
Target:  5'- aGGC-GGC-UCGCCUGGccgccgagcgcGACGAGGUGc -3'
miRNA:   3'- aCCGuCCGuGGUGGACC-----------UUGCUCCAC- -5'
19243 3' -58.5 NC_004684.1 + 38616 0.7 0.336266
Target:  5'- cGGguGGCauGCCgcugACCUGGAGCGGGa-- -3'
miRNA:   3'- aCCguCCG--UGG----UGGACCUUGCUCcac -5'
19243 3' -58.5 NC_004684.1 + 16724 0.7 0.34426
Target:  5'- cGGCaccGGGCGCaCGCCUGGuccgcacccccGACGGcGGUGu -3'
miRNA:   3'- aCCG---UCCGUG-GUGGACC-----------UUGCU-CCAC- -5'
19243 3' -58.5 NC_004684.1 + 22186 0.7 0.34426
Target:  5'- cGGCGgcGGCgACCGCCUucGGAcugGCGcAGGUGg -3'
miRNA:   3'- aCCGU--CCG-UGGUGGA--CCU---UGC-UCCAC- -5'
19243 3' -58.5 NC_004684.1 + 49404 0.7 0.369051
Target:  5'- cGGuCAGcGcCACCACCUGGAGCuuGGa- -3'
miRNA:   3'- aCC-GUC-C-GUGGUGGACCUUGcuCCac -5'
19243 3' -58.5 NC_004684.1 + 38812 0.7 0.369051
Target:  5'- cGGCGGuGC-CCGCCUGGcggugcccGACGGccuGGUGg -3'
miRNA:   3'- aCCGUC-CGuGGUGGACC--------UUGCU---CCAC- -5'
19243 3' -58.5 NC_004684.1 + 47217 0.7 0.369051
Target:  5'- gUGGUAGGUaugcaucagcgcACCGCCUcGGGcGCGAGGg- -3'
miRNA:   3'- -ACCGUCCG------------UGGUGGA-CCU-UGCUCCac -5'
19243 3' -58.5 NC_004684.1 + 9870 0.7 0.369051
Target:  5'- aGGCGGGcCACCGCCUcgGGAuccgGCGcAGGc- -3'
miRNA:   3'- aCCGUCC-GUGGUGGA--CCU----UGC-UCCac -5'
19243 3' -58.5 NC_004684.1 + 58811 0.69 0.377582
Target:  5'- cGGUAGGUGCCGCCUcGGAugucCGGGaUGa -3'
miRNA:   3'- aCCGUCCGUGGUGGA-CCUu---GCUCcAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.