miRNA display CGI


Results 21 - 40 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19243 3' -58.5 NC_004684.1 + 6968 0.67 0.489599
Target:  5'- cGGCAacGGCAaCGCCaaGAagACGAGGUGa -3'
miRNA:   3'- aCCGU--CCGUgGUGGacCU--UGCUCCAC- -5'
19243 3' -58.5 NC_004684.1 + 5006 0.67 0.489599
Target:  5'- gGGCccGGUGCCGCUccugaUGGAccgcgacgACGAGGUGc -3'
miRNA:   3'- aCCGu-CCGUGGUGG-----ACCU--------UGCUCCAC- -5'
19243 3' -58.5 NC_004684.1 + 31400 0.68 0.483616
Target:  5'- cGGCGGGCACCACCccGAcugugcgccaggccuGCGuGGa- -3'
miRNA:   3'- aCCGUCCGUGGUGGacCU---------------UGCuCCac -5'
19243 3' -58.5 NC_004684.1 + 12978 0.68 0.479647
Target:  5'- cGGCAGGCAaCACCgagcgccGGGCcGGGUGg -3'
miRNA:   3'- aCCGUCCGUgGUGGac-----CUUGcUCCAC- -5'
19243 3' -58.5 NC_004684.1 + 19692 0.68 0.469795
Target:  5'- cGGCaAGGCcugGCCgagccaagACCUGGGACGGccacucGGUGa -3'
miRNA:   3'- aCCG-UCCG---UGG--------UGGACCUUGCU------CCAC- -5'
19243 3' -58.5 NC_004684.1 + 47426 0.68 0.460048
Target:  5'- cUGGUgcuccGGCACCACCUGGucGCgcagcucgcuGAGGUa -3'
miRNA:   3'- -ACCGu----CCGUGGUGGACCu-UG----------CUCCAc -5'
19243 3' -58.5 NC_004684.1 + 18753 0.68 0.454251
Target:  5'- gGuGCAGcGCAUCuggGCCUGGGAagaggcgcacggcacCGAGGUGg -3'
miRNA:   3'- aC-CGUC-CGUGG---UGGACCUU---------------GCUCCAC- -5'
19243 3' -58.5 NC_004684.1 + 61308 0.68 0.454251
Target:  5'- cGGCA-GCACCGCCgccGGGccgccgcccucggcgGCGuAGGUGg -3'
miRNA:   3'- aCCGUcCGUGGUGGa--CCU---------------UGC-UCCAC- -5'
19243 3' -58.5 NC_004684.1 + 53728 0.68 0.450409
Target:  5'- cGGCAuGGUGCCggguucgacgGCCaGGAAcacCGAGGUGg -3'
miRNA:   3'- aCCGU-CCGUGG----------UGGaCCUU---GCUCCAC- -5'
19243 3' -58.5 NC_004684.1 + 21217 0.68 0.440882
Target:  5'- cGcGCAGGCGCUucacuucuggugGCgUGGccGCGAGGUGu -3'
miRNA:   3'- aC-CGUCCGUGG------------UGgACCu-UGCUCCAC- -5'
19243 3' -58.5 NC_004684.1 + 28589 0.69 0.413006
Target:  5'- aGGCGGGCACCGCCgcUGGAAa------ -3'
miRNA:   3'- aCCGUCCGUGGUGG--ACCUUgcuccac -5'
19243 3' -58.5 NC_004684.1 + 49068 0.69 0.403959
Target:  5'- gGGC-GGCACCGgCgugcGGAACaGGGUGa -3'
miRNA:   3'- aCCGuCCGUGGUgGa---CCUUGcUCCAC- -5'
19243 3' -58.5 NC_004684.1 + 62022 0.69 0.403959
Target:  5'- gGGaCGGGgGCCACggGGuugAGCGGGGUGg -3'
miRNA:   3'- aCC-GUCCgUGGUGgaCC---UUGCUCCAC- -5'
19243 3' -58.5 NC_004684.1 + 43225 0.69 0.401269
Target:  5'- cGGC-GGCACCGCCUgcggacccugcaccGGAGCGgugcgcagcGGGUa -3'
miRNA:   3'- aCCGuCCGUGGUGGA--------------CCUUGC---------UCCAc -5'
19243 3' -58.5 NC_004684.1 + 40323 0.69 0.395037
Target:  5'- cGGCAGGCACgACCUcGGcGCuGGGc- -3'
miRNA:   3'- aCCGUCCGUGgUGGA-CCuUGcUCCac -5'
19243 3' -58.5 NC_004684.1 + 8448 0.69 0.383632
Target:  5'- gGGCccGGCGCaagGCCUGGcuguuguccccggaGGCGGGGUGg -3'
miRNA:   3'- aCCGu-CCGUGg--UGGACC--------------UUGCUCCAC- -5'
19243 3' -58.5 NC_004684.1 + 58811 0.69 0.377582
Target:  5'- cGGUAGGUGCCGCCUcGGAugucCGGGaUGa -3'
miRNA:   3'- aCCGUCCGUGGUGGA-CCUu---GCUCcAC- -5'
19243 3' -58.5 NC_004684.1 + 47629 0.69 0.377582
Target:  5'- cGGCGGGCACCGgCaGGccGCGcAGGUa -3'
miRNA:   3'- aCCGUCCGUGGUgGaCCu-UGC-UCCAc -5'
19243 3' -58.5 NC_004684.1 + 38812 0.7 0.369051
Target:  5'- cGGCGGuGC-CCGCCUGGcggugcccGACGGccuGGUGg -3'
miRNA:   3'- aCCGUC-CGuGGUGGACC--------UUGCU---CCAC- -5'
19243 3' -58.5 NC_004684.1 + 9870 0.7 0.369051
Target:  5'- aGGCGGGcCACCGCCUcgGGAuccgGCGcAGGc- -3'
miRNA:   3'- aCCGUCC-GUGGUGGA--CCU----UGC-UCCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.