miRNA display CGI


Results 21 - 40 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19243 5' -59.1 NC_004684.1 + 30478 0.67 0.513287
Target:  5'- gGCACgcucGGcuaugacccgaGCgUGGGGCGGCuggCGCUGGg -3'
miRNA:   3'- aCGUGa---CC-----------UGgACCUCGCUG---GCGACC- -5'
19243 5' -59.1 NC_004684.1 + 3821 0.67 0.51228
Target:  5'- cGCGCaggccgaUGGACCugaUGGcAGCGGCCGa-GGa -3'
miRNA:   3'- aCGUG-------ACCUGG---ACC-UCGCUGGCgaCC- -5'
19243 5' -59.1 NC_004684.1 + 29433 0.67 0.512279
Target:  5'- gUGCGCccGGACCcgcUGG-GCGACCGguucgacaucgacCUGGu -3'
miRNA:   3'- -ACGUGa-CCUGG---ACCuCGCUGGC-------------GACC- -5'
19243 5' -59.1 NC_004684.1 + 57207 0.67 0.509261
Target:  5'- gGCGCUGGGCgguCUGGAacuccucgagcgcgGUGGCCagcggcgGCUGGc -3'
miRNA:   3'- aCGUGACCUG---GACCU--------------CGCUGG-------CGACC- -5'
19243 5' -59.1 NC_004684.1 + 28722 0.67 0.503247
Target:  5'- cGCGCcGGACCUGGAucagGuCGacGCCGUUGcGg -3'
miRNA:   3'- aCGUGaCCUGGACCU----C-GC--UGGCGAC-C- -5'
19243 5' -59.1 NC_004684.1 + 3012 0.67 0.503247
Target:  5'- aUGCugauGCcGGACCacaUGGAGCuGACCGCg-- -3'
miRNA:   3'- -ACG----UGaCCUGG---ACCUCG-CUGGCGacc -5'
19243 5' -59.1 NC_004684.1 + 52735 0.67 0.503246
Target:  5'- gGCGCUGuccuCCaGGucgucGUGGCCGCUGGc -3'
miRNA:   3'- aCGUGACcu--GGaCCu----CGCUGGCGACC- -5'
19243 5' -59.1 NC_004684.1 + 43720 0.67 0.503246
Target:  5'- aUGCGCUGGuauGCCUGGAcauaGCGcagcGCCucgGCUGa -3'
miRNA:   3'- -ACGUGACC---UGGACCU----CGC----UGG---CGACc -5'
19243 5' -59.1 NC_004684.1 + 51178 0.67 0.493292
Target:  5'- aUGCGCcGGGCCaUGGAccGCGcGCC-CUGGc -3'
miRNA:   3'- -ACGUGaCCUGG-ACCU--CGC-UGGcGACC- -5'
19243 5' -59.1 NC_004684.1 + 24568 0.67 0.493292
Target:  5'- aGUugUGcGGCCU-GAGCGGCCagcgaGUUGGg -3'
miRNA:   3'- aCGugAC-CUGGAcCUCGCUGG-----CGACC- -5'
19243 5' -59.1 NC_004684.1 + 40417 0.67 0.493292
Target:  5'- cGCACcGG-CCUGGAugGCGG-CGUUGGc -3'
miRNA:   3'- aCGUGaCCuGGACCU--CGCUgGCGACC- -5'
19243 5' -59.1 NC_004684.1 + 3752 0.67 0.483429
Target:  5'- cGUGCUGG-CgUGGGGCGACaCGaaagGGa -3'
miRNA:   3'- aCGUGACCuGgACCUCGCUG-GCga--CC- -5'
19243 5' -59.1 NC_004684.1 + 2847 0.67 0.480488
Target:  5'- aGCAcCUGGACCacgGGuuccuggucgcgccGGaCGACCuGCUGGu -3'
miRNA:   3'- aCGU-GACCUGGa--CC--------------UC-GCUGG-CGACC- -5'
19243 5' -59.1 NC_004684.1 + 31550 0.68 0.473661
Target:  5'- cGCgaACUGGACC-GcGAGCG-UCGCUGa -3'
miRNA:   3'- aCG--UGACCUGGaC-CUCGCuGGCGACc -5'
19243 5' -59.1 NC_004684.1 + 45265 0.68 0.454431
Target:  5'- cGCGCUGGACgcgcugagCUGccaGGCG-CUGCUGGu -3'
miRNA:   3'- aCGUGACCUG--------GACc--UCGCuGGCGACC- -5'
19243 5' -59.1 NC_004684.1 + 18760 0.68 0.454431
Target:  5'- cGCAuCUGGGCCUGGgaagaGGCGcacggcACCGaggUGGg -3'
miRNA:   3'- aCGU-GACCUGGACC-----UCGC------UGGCg--ACC- -5'
19243 5' -59.1 NC_004684.1 + 7790 0.68 0.444976
Target:  5'- aGCAUUGGugCgcgGGAuGUGACCgGgUGGu -3'
miRNA:   3'- aCGUGACCugGa--CCU-CGCUGG-CgACC- -5'
19243 5' -59.1 NC_004684.1 + 51734 0.68 0.444975
Target:  5'- cGUACUGGGCCaGGAauGCGGCgUGCUccaGGc -3'
miRNA:   3'- aCGUGACCUGGaCCU--CGCUG-GCGA---CC- -5'
19243 5' -59.1 NC_004684.1 + 22149 0.68 0.436561
Target:  5'- aGCGCUGGcuGCCgGGccugaccagcaccaAGCGccgcauggacgcgcuGCCGCUGGa -3'
miRNA:   3'- aCGUGACC--UGGaCC--------------UCGC---------------UGGCGACC- -5'
19243 5' -59.1 NC_004684.1 + 25202 0.68 0.426402
Target:  5'- gGCGCUGGcACCgGGuGGCuucaccGGCaCGCUGGa -3'
miRNA:   3'- aCGUGACC-UGGaCC-UCG------CUG-GCGACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.