miRNA display CGI


Results 21 - 40 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19244 5' -59.3 NC_004684.1 + 46766 0.66 0.528727
Target:  5'- cUCGACGcGCuGgCGCuCGCcGGUGCCc -3'
miRNA:   3'- -AGCUGUuCG-CgGCGuGCGuCCACGGa -5'
19244 5' -59.3 NC_004684.1 + 24779 0.66 0.528727
Target:  5'- gCGGCGggggaGGUGCCGgGuCGaAGGUGCCg -3'
miRNA:   3'- aGCUGU-----UCGCGGCgU-GCgUCCACGGa -5'
19244 5' -59.3 NC_004684.1 + 53733 0.66 0.528727
Target:  5'- -gGACcguGCGCCacgagacacCACGCAGGUGCg- -3'
miRNA:   3'- agCUGuu-CGCGGc--------GUGCGUCCACGga -5'
19244 5' -59.3 NC_004684.1 + 49054 0.66 0.522587
Target:  5'- cUCGGCAGGCucggccaggugcucGUCGCccACgucgccgccaaccgGCAGGUGCCa -3'
miRNA:   3'- -AGCUGUUCG--------------CGGCG--UG--------------CGUCCACGGa -5'
19244 5' -59.3 NC_004684.1 + 40727 0.66 0.518508
Target:  5'- aCGACcAGCGCgGCgggggcggugGCGguGGUGUUg -3'
miRNA:   3'- aGCUGuUCGCGgCG----------UGCguCCACGGa -5'
19244 5' -59.3 NC_004684.1 + 23196 0.66 0.518508
Target:  5'- gUCGACAAGUaCCGCG---AGGUGCUg -3'
miRNA:   3'- -AGCUGUUCGcGGCGUgcgUCCACGGa -5'
19244 5' -59.3 NC_004684.1 + 57591 0.66 0.518508
Target:  5'- gCGuCGGGUGCCaCcgGCGCAGG-GCCUc -3'
miRNA:   3'- aGCuGUUCGCGGcG--UGCGUCCaCGGA- -5'
19244 5' -59.3 NC_004684.1 + 2864 0.66 0.518508
Target:  5'- cCGcCGAGcCGCUGgGCGUcaucGGUGCCUg -3'
miRNA:   3'- aGCuGUUC-GCGGCgUGCGu---CCACGGA- -5'
19244 5' -59.3 NC_004684.1 + 60521 0.66 0.517491
Target:  5'- aUCGaccGCAGGCugaucucGCCGCGC-CcGGUGCCg -3'
miRNA:   3'- -AGC---UGUUCG-------CGGCGUGcGuCCACGGa -5'
19244 5' -59.3 NC_004684.1 + 66979 0.66 0.517491
Target:  5'- gUCGACccAGUGCaccaggauuucccCGUACGCGGG-GCCg -3'
miRNA:   3'- -AGCUGu-UCGCG-------------GCGUGCGUCCaCGGa -5'
19244 5' -59.3 NC_004684.1 + 622 0.66 0.508369
Target:  5'- gCGGCGAguaccGCGCCGagguCGCcgGGGUGCUg -3'
miRNA:   3'- aGCUGUU-----CGCGGCgu--GCG--UCCACGGa -5'
19244 5' -59.3 NC_004684.1 + 29525 0.66 0.508369
Target:  5'- -aGGCcuGCGCUGguCGguGGUuGCCg -3'
miRNA:   3'- agCUGuuCGCGGCguGCguCCA-CGGa -5'
19244 5' -59.3 NC_004684.1 + 52598 0.66 0.508369
Target:  5'- -gGACAGcGCGCCGC-CGUAGuuGUGCg- -3'
miRNA:   3'- agCUGUU-CGCGGCGuGCGUC--CACGga -5'
19244 5' -59.3 NC_004684.1 + 22898 0.67 0.502325
Target:  5'- aCGACAcguacaaccugucccGGUGguccacgCGCACGCAGGUGgCCa -3'
miRNA:   3'- aGCUGU---------------UCGCg------GCGUGCGUCCAC-GGa -5'
19244 5' -59.3 NC_004684.1 + 55810 0.67 0.498314
Target:  5'- cCGGUGAGCGCgugcgaGCACG-GGGUGCCg -3'
miRNA:   3'- aGCUGUUCGCGg-----CGUGCgUCCACGGa -5'
19244 5' -59.3 NC_004684.1 + 31100 0.67 0.498314
Target:  5'- cUGGCAGGaCGCCGC--GCAGGcGCUg -3'
miRNA:   3'- aGCUGUUC-GCGGCGugCGUCCaCGGa -5'
19244 5' -59.3 NC_004684.1 + 63582 0.67 0.498314
Target:  5'- aUCGGCcuGCGCgGCgcgGCGguGGUuaccGCCUc -3'
miRNA:   3'- -AGCUGuuCGCGgCG---UGCguCCA----CGGA- -5'
19244 5' -59.3 NC_004684.1 + 55320 0.67 0.498314
Target:  5'- cCGAuCGAGUucGCCgacgGCugGCAGGUgaGCCUg -3'
miRNA:   3'- aGCU-GUUCG--CGG----CGugCGUCCA--CGGA- -5'
19244 5' -59.3 NC_004684.1 + 47538 0.67 0.498314
Target:  5'- gCGcUGAGCGCauCGCGCAGG-GCCa -3'
miRNA:   3'- aGCuGUUCGCGgcGUGCGUCCaCGGa -5'
19244 5' -59.3 NC_004684.1 + 2271 0.67 0.495315
Target:  5'- gCGGCGGGCauuGCCGCcagccugggccacgACGC-GGUGCUg -3'
miRNA:   3'- aGCUGUUCG---CGGCG--------------UGCGuCCACGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.