miRNA display CGI


Results 21 - 40 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19245 3' -56.5 NC_004684.1 + 5656 0.67 0.687148
Target:  5'- gGCGgauuccuGCCUcaGCCGugguCGGaGGUGGCCGg -3'
miRNA:   3'- gCGU-------UGGA--UGGCu---GCCaCCACUGGCa -5'
19245 3' -56.5 NC_004684.1 + 48927 0.67 0.677631
Target:  5'- cCGCAggcccgGCCUcgucGCCGaacggcacgucgGCGGgcggGGUGGCCGg -3'
miRNA:   3'- -GCGU------UGGA----UGGC------------UGCCa---CCACUGGCa -5'
19245 3' -56.5 NC_004684.1 + 47413 0.67 0.677631
Target:  5'- cCGguGCCUGCUGGaGGUGGUGGggGUu -3'
miRNA:   3'- -GCguUGGAUGGCUgCCACCACUggCA- -5'
19245 3' -56.5 NC_004684.1 + 5587 0.67 0.677631
Target:  5'- gGCGacccGCCUGCCGACGG----GGCCGa -3'
miRNA:   3'- gCGU----UGGAUGGCUGCCaccaCUGGCa -5'
19245 3' -56.5 NC_004684.1 + 18347 0.67 0.667018
Target:  5'- cCGgAGCCgACCGGCGGcgcGGUG-CCGc -3'
miRNA:   3'- -GCgUUGGaUGGCUGCCa--CCACuGGCa -5'
19245 3' -56.5 NC_004684.1 + 7594 0.67 0.667018
Target:  5'- aGCGACaUGCUGGCGGUGuucgccuccUGGCCGg -3'
miRNA:   3'- gCGUUGgAUGGCUGCCACc--------ACUGGCa -5'
19245 3' -56.5 NC_004684.1 + 33870 0.67 0.656375
Target:  5'- uCGUucGGCCUACCaGGCGGUgcgggcGGUG-CCGg -3'
miRNA:   3'- -GCG--UUGGAUGG-CUGCCA------CCACuGGCa -5'
19245 3' -56.5 NC_004684.1 + 65796 0.67 0.645711
Target:  5'- gGCGACCgaUGCCGugcacCGGgcaGGUGACCc- -3'
miRNA:   3'- gCGUUGG--AUGGCu----GCCa--CCACUGGca -5'
19245 3' -56.5 NC_004684.1 + 29518 0.67 0.645711
Target:  5'- uGCAgaaagGCCUgcGCUGGuCGGUGGUuGCCGg -3'
miRNA:   3'- gCGU-----UGGA--UGGCU-GCCACCAcUGGCa -5'
19245 3' -56.5 NC_004684.1 + 58762 0.67 0.645711
Target:  5'- gGguGCCgaggAUCGGCGGUgccGGUGcACCGg -3'
miRNA:   3'- gCguUGGa---UGGCUGCCA---CCAC-UGGCa -5'
19245 3' -56.5 NC_004684.1 + 40693 0.67 0.644643
Target:  5'- gGCGACgaACUucagcugGGCGGcGGUGGCCGg -3'
miRNA:   3'- gCGUUGgaUGG-------CUGCCaCCACUGGCa -5'
19245 3' -56.5 NC_004684.1 + 66172 0.67 0.635034
Target:  5'- gGCAGauCCaGCCGGugguggUGGUGGUGGCCa- -3'
miRNA:   3'- gCGUU--GGaUGGCU------GCCACCACUGGca -5'
19245 3' -56.5 NC_004684.1 + 63583 0.67 0.635034
Target:  5'- -uCGGCCUGCgcggcgCGGCGGUGGUuACCGc -3'
miRNA:   3'- gcGUUGGAUG------GCUGCCACCAcUGGCa -5'
19245 3' -56.5 NC_004684.1 + 43743 0.67 0.635034
Target:  5'- gCGCAgcGCCUcgGCUGACGGUaccggcguGGUcaGGCCGg -3'
miRNA:   3'- -GCGU--UGGA--UGGCUGCCA--------CCA--CUGGCa -5'
19245 3' -56.5 NC_004684.1 + 31873 0.68 0.624355
Target:  5'- aGCuGCCcGCCGACGuGcUGGUGgacGCCGg -3'
miRNA:   3'- gCGuUGGaUGGCUGC-C-ACCAC---UGGCa -5'
19245 3' -56.5 NC_004684.1 + 57875 0.68 0.624355
Target:  5'- gGCAcGCCagACCGGugcUGGcUGGUGGCCGg -3'
miRNA:   3'- gCGU-UGGa-UGGCU---GCC-ACCACUGGCa -5'
19245 3' -56.5 NC_004684.1 + 6225 0.68 0.624355
Target:  5'- cCGcCGACCUgGCCG--GGUGGcUGACCGa -3'
miRNA:   3'- -GC-GUUGGA-UGGCugCCACC-ACUGGCa -5'
19245 3' -56.5 NC_004684.1 + 62350 0.68 0.613683
Target:  5'- aGC-GCCgggUGCCaGACGcGUGGUGGCCa- -3'
miRNA:   3'- gCGuUGG---AUGG-CUGC-CACCACUGGca -5'
19245 3' -56.5 NC_004684.1 + 40360 0.68 0.613683
Target:  5'- gGCGGCCUugGCCuugggggccucGGCGGUGGcGGCCu- -3'
miRNA:   3'- gCGUUGGA--UGG-----------CUGCCACCaCUGGca -5'
19245 3' -56.5 NC_004684.1 + 29805 0.68 0.612616
Target:  5'- gGC-ACCUACCGGgacacccUGGUGGUG-CCa- -3'
miRNA:   3'- gCGuUGGAUGGCU-------GCCACCACuGGca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.