miRNA display CGI


Results 21 - 40 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19246 3' -62.1 NC_004684.1 + 47623 0.66 0.390229
Target:  5'- cGCCCC-CGGCGGGcaccGGCa---GGCCGc -3'
miRNA:   3'- -UGGGGuGUCGUCCa---CCGguagCCGGU- -5'
19246 3' -62.1 NC_004684.1 + 64220 0.66 0.390229
Target:  5'- cACCUgggaCACGGCGu-UGGCC-UCGGCCAg -3'
miRNA:   3'- -UGGG----GUGUCGUccACCGGuAGCCGGU- -5'
19246 3' -62.1 NC_004684.1 + 66588 0.66 0.387649
Target:  5'- gGCCgCCACGGCgAGGUgcaggugagGGCCAucauucacggugccUCGGCg- -3'
miRNA:   3'- -UGG-GGUGUCG-UCCA---------CCGGU--------------AGCCGgu -5'
19246 3' -62.1 NC_004684.1 + 16749 0.66 0.381674
Target:  5'- cACCCCcgACGGCGGuGUcgacuGGUUcuguGUCGGCCAc -3'
miRNA:   3'- -UGGGG--UGUCGUC-CA-----CCGG----UAGCCGGU- -5'
19246 3' -62.1 NC_004684.1 + 55595 0.66 0.381674
Target:  5'- cGCCCUucucCAcGGUGGCCugGUCGGCCc -3'
miRNA:   3'- -UGGGGugucGU-CCACCGG--UAGCCGGu -5'
19246 3' -62.1 NC_004684.1 + 22923 0.66 0.381674
Target:  5'- -gUCCACGcgcacGCAGGUGGCCAgCGuGCuCAg -3'
miRNA:   3'- ugGGGUGU-----CGUCCACCGGUaGC-CG-GU- -5'
19246 3' -62.1 NC_004684.1 + 52281 0.66 0.373245
Target:  5'- gUCCCggugACGGCaAGGUcGGCCuccagggCGGCCAc -3'
miRNA:   3'- uGGGG----UGUCG-UCCA-CCGGua-----GCCGGU- -5'
19246 3' -62.1 NC_004684.1 + 5168 0.66 0.373245
Target:  5'- uACCCCGauGUcgAGGUGGCgCugGUUGGCCAg -3'
miRNA:   3'- -UGGGGUguCG--UCCACCG-G--UAGCCGGU- -5'
19246 3' -62.1 NC_004684.1 + 19466 0.66 0.373245
Target:  5'- gGCCUggaaGCAGaAGGUGGCCGa-GGCCGc -3'
miRNA:   3'- -UGGGg---UGUCgUCCACCGGUagCCGGU- -5'
19246 3' -62.1 NC_004684.1 + 62683 0.66 0.373245
Target:  5'- -aCUCGCc-CAGGUGGaaAUCGGCCAc -3'
miRNA:   3'- ugGGGUGucGUCCACCggUAGCCGGU- -5'
19246 3' -62.1 NC_004684.1 + 60738 0.66 0.364943
Target:  5'- uGCCCgGCGacCGGGUGGCCgccggguggggGUUGGUCAg -3'
miRNA:   3'- -UGGGgUGUc-GUCCACCGG-----------UAGCCGGU- -5'
19246 3' -62.1 NC_004684.1 + 65978 0.66 0.364943
Target:  5'- gGCCCgGCAGgccucCAGGUcgcuGGCCAgugcaacggCGGCCu -3'
miRNA:   3'- -UGGGgUGUC-----GUCCA----CCGGUa--------GCCGGu -5'
19246 3' -62.1 NC_004684.1 + 45248 0.66 0.364943
Target:  5'- gGCCCgGCAGcCAGcGcUGGUCG-CGGCCc -3'
miRNA:   3'- -UGGGgUGUC-GUC-C-ACCGGUaGCCGGu -5'
19246 3' -62.1 NC_004684.1 + 50329 0.66 0.364943
Target:  5'- cGCCCgGCcaGGCGGGcGGCCuccuuggcAUCGGCa- -3'
miRNA:   3'- -UGGGgUG--UCGUCCaCCGG--------UAGCCGgu -5'
19246 3' -62.1 NC_004684.1 + 43242 0.67 0.360023
Target:  5'- gACCCUgcaccggagcggugcGCAGCGGGUacGGCUgcugcGUCGGCg- -3'
miRNA:   3'- -UGGGG---------------UGUCGUCCA--CCGG-----UAGCCGgu -5'
19246 3' -62.1 NC_004684.1 + 349 0.67 0.356769
Target:  5'- aGCgUgCGCAGCAgcucGGUGGCCA--GGCCAu -3'
miRNA:   3'- -UG-GgGUGUCGU----CCACCGGUagCCGGU- -5'
19246 3' -62.1 NC_004684.1 + 11602 0.67 0.356769
Target:  5'- uGCgCCUggacgACGGCAccgaGcUGGCCGUCGGCCGc -3'
miRNA:   3'- -UG-GGG-----UGUCGU----CcACCGGUAGCCGGU- -5'
19246 3' -62.1 NC_004684.1 + 62898 0.67 0.356769
Target:  5'- uGCCguugCCACGGCGGGccaGGCCc-UGGCCGg -3'
miRNA:   3'- -UGG----GGUGUCGUCCa--CCGGuaGCCGGU- -5'
19246 3' -62.1 NC_004684.1 + 38832 0.67 0.348725
Target:  5'- uGCCCgACGGCcuGGUGGCCc-UGGCg- -3'
miRNA:   3'- -UGGGgUGUCGu-CCACCGGuaGCCGgu -5'
19246 3' -62.1 NC_004684.1 + 39304 0.67 0.348725
Target:  5'- -aCCCGguGCGGGUcgcgcggcGGCC--CGGCCAc -3'
miRNA:   3'- ugGGGUguCGUCCA--------CCGGuaGCCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.