miRNA display CGI

Results 41 - 47 of 47 are showing below:
Show page: 1 2 3

<< Previous Page | Next Page >>

ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
19246	5'	-54.4	NC_004684.1	+	42186	0.72	0.459408
	Target:  5'- gCGCggUGAGcagugGGCCGuGGAgCUGGUGg -3' miRNA:   3'- -GCGuuGCUCua---CCGGUuCCU-GACCAC- -5'
19246	5'	-54.4	NC_004684.1	+	9429	0.72	0.449556
	Target:  5'- aGCcGCGAGAcGGCCAugguGGAggccCUGGUGu -3' miRNA:   3'- gCGuUGCUCUaCCGGUu---CCU----GACCAC- -5'
19246	5'	-54.4	NC_004684.1	+	55249	0.73	0.42072
	Target:  5'- uGCGG-GAGAUGGaaGAGGAgCUGGUGg -3' miRNA:   3'- gCGUUgCUCUACCggUUCCU-GACCAC- -5'
19246	5'	-54.4	NC_004684.1	+	19364	0.73	0.411359
	Target:  5'- aGCGGCGcaacAUGGCCGAGGACaccgcugucaUGGUGc -3' miRNA:   3'- gCGUUGCuc--UACCGGUUCCUG----------ACCAC- -5'
19246	5'	-54.4	NC_004684.1	+	18561	0.75	0.325219
	Target:  5'- aCGCGACGGc--GGCCGAGGucaagaccgcGCUGGUGg -3' miRNA:   3'- -GCGUUGCUcuaCCGGUUCC----------UGACCAC- -5'
19246	5'	-54.4	NC_004684.1	+	25054	0.75	0.309684
	Target:  5'- gGCGAUGuAGGUGGCCAGGGcgGCcggguUGGUGg -3' miRNA:   3'- gCGUUGC-UCUACCGGUUCC--UG-----ACCAC- -5'
19246	5'	-54.4	NC_004684.1	+	57708	1.09	0.001407
	Target:  5'- gCGCAACGAGAUGGCCAAGGACUGGUGg -3' miRNA:   3'- -GCGUUGCUCUACCGGUUCCUGACCAC- -5'

<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home