miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19246 5' -54.4 NC_004684.1 + 358 0.67 0.767706
Target:  5'- aGCAGCucGGUGGCCAGGccauCgUGGUGc -3'
miRNA:   3'- gCGUUGcuCUACCGGUUCcu--G-ACCAC- -5'
19246 5' -54.4 NC_004684.1 + 621 0.66 0.806903
Target:  5'- gGCGGCGAGuaccGcGCCGAGGuCgccggGGUGc -3'
miRNA:   3'- gCGUUGCUCua--C-CGGUUCCuGa----CCAC- -5'
19246 5' -54.4 NC_004684.1 + 4173 0.66 0.79735
Target:  5'- gGCAACGAGccgccgGUGGCCGAGaagaUGGg- -3'
miRNA:   3'- gCGUUGCUC------UACCGGUUCcug-ACCac -5'
19246 5' -54.4 NC_004684.1 + 4990 0.67 0.747233
Target:  5'- gGCAGCGcGA-GGgCAAGGGCccGGUGc -3'
miRNA:   3'- gCGUUGCuCUaCCgGUUCCUGa-CCAC- -5'
19246 5' -54.4 NC_004684.1 + 5482 0.68 0.715683
Target:  5'- gGCGACG-GAacgauugcgcUGGUaGAGGACUGGUc -3'
miRNA:   3'- gCGUUGCuCU----------ACCGgUUCCUGACCAc -5'
19246 5' -54.4 NC_004684.1 + 8826 0.67 0.757533
Target:  5'- cCGCAACGAcgccaucgcccGAcUGGCCAuGGGcCUGGa- -3'
miRNA:   3'- -GCGUUGCU-----------CU-ACCGGUuCCU-GACCac -5'
19246 5' -54.4 NC_004684.1 + 9429 0.72 0.449556
Target:  5'- aGCcGCGAGAcGGCCAugguGGAggccCUGGUGu -3'
miRNA:   3'- gCGuUGCUCUaCCGGUu---CCU----GACCAC- -5'
19246 5' -54.4 NC_004684.1 + 10254 0.69 0.650671
Target:  5'- gCGCGugGAGcgGGCCAaccaacuggccAGcGACgccGGUGu -3'
miRNA:   3'- -GCGUugCUCuaCCGGU-----------UC-CUGa--CCAC- -5'
19246 5' -54.4 NC_004684.1 + 10626 0.66 0.806903
Target:  5'- cCGUAuggGCGuGcUGGCCGAGGACgaGGa- -3'
miRNA:   3'- -GCGU---UGCuCuACCGGUUCCUGa-CCac -5'
19246 5' -54.4 NC_004684.1 + 12018 0.69 0.628752
Target:  5'- uCGCGGCGGcGGUGGCCAAGGcCa---- -3'
miRNA:   3'- -GCGUUGCU-CUACCGGUUCCuGaccac -5'
19246 5' -54.4 NC_004684.1 + 13266 0.72 0.469374
Target:  5'- cCGcCAGCGcgcuGGUGGCCGccGGuGGCUGGUGc -3'
miRNA:   3'- -GC-GUUGCu---CUACCGGU--UC-CUGACCAC- -5'
19246 5' -54.4 NC_004684.1 + 13464 0.69 0.639715
Target:  5'- aGCAGCuGGA-GGCCGAGGAC-GGc- -3'
miRNA:   3'- gCGUUGcUCUaCCGGUUCCUGaCCac -5'
19246 5' -54.4 NC_004684.1 + 14686 0.66 0.777741
Target:  5'- gCGUGGCGAGGccgacgGGCgCGAGGAcCUGGc- -3'
miRNA:   3'- -GCGUUGCUCUa-----CCG-GUUCCU-GACCac -5'
19246 5' -54.4 NC_004684.1 + 15776 0.67 0.767706
Target:  5'- uGCGcCGAGcgcGGCCAAGGAacacCUGGa- -3'
miRNA:   3'- gCGUuGCUCua-CCGGUUCCU----GACCac -5'
19246 5' -54.4 NC_004684.1 + 16157 0.67 0.73577
Target:  5'- gGCAuCGAccggccGAUGGCCAAGGugauccuGCUGGc- -3'
miRNA:   3'- gCGUuGCU------CUACCGGUUCC-------UGACCac -5'
19246 5' -54.4 NC_004684.1 + 18561 0.75 0.325219
Target:  5'- aCGCGACGGc--GGCCGAGGucaagaccgcGCUGGUGg -3'
miRNA:   3'- -GCGUUGCUcuaCCGGUUCC----------UGACCAC- -5'
19246 5' -54.4 NC_004684.1 + 19364 0.73 0.411359
Target:  5'- aGCGGCGcaacAUGGCCGAGGACaccgcugucaUGGUGc -3'
miRNA:   3'- gCGUUGCuc--UACCGGUUCCUG----------ACCAC- -5'
19246 5' -54.4 NC_004684.1 + 21971 0.68 0.698536
Target:  5'- gGCGGCGAcaccgaggccaagguGGUGcGCCAGGGuCcGGUGg -3'
miRNA:   3'- gCGUUGCU---------------CUAC-CGGUUCCuGaCCAC- -5'
19246 5' -54.4 NC_004684.1 + 22207 0.7 0.574167
Target:  5'- gCGCGGCGGGGuggUGGCCGAcuucauGGAcCUGGa- -3'
miRNA:   3'- -GCGUUGCUCU---ACCGGUU------CCU-GACCac -5'
19246 5' -54.4 NC_004684.1 + 22703 0.7 0.574167
Target:  5'- gGCGGCGcAGGacgUGGCCAAGGccgugGCUGGc- -3'
miRNA:   3'- gCGUUGC-UCU---ACCGGUUCC-----UGACCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.