miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19247 3' -53.5 NC_004684.1 + 12875 0.67 0.813123
Target:  5'- cUCGuACCcc--CGCCGGUGAGC-GCGg -3'
miRNA:   3'- -GGC-UGGuaaaGCGGCUACUCGaCGCa -5'
19247 3' -53.5 NC_004684.1 + 47706 0.67 0.804665
Target:  5'- cUCGGCCAggccuugccgccgCGCCGGUaGAGC-GCGUu -3'
miRNA:   3'- -GGCUGGUaaa----------GCGGCUA-CUCGaCGCA- -5'
19247 3' -53.5 NC_004684.1 + 4055 0.67 0.803716
Target:  5'- aCCGGCCA--UCGCCGGgugaccggguggUGGGaCUGuCGa -3'
miRNA:   3'- -GGCUGGUaaAGCGGCU------------ACUC-GAC-GCa -5'
19247 3' -53.5 NC_004684.1 + 24321 0.67 0.803716
Target:  5'- -aGACCcg-UCGCCG--GAGCUGCu- -3'
miRNA:   3'- ggCUGGuaaAGCGGCuaCUCGACGca -5'
19247 3' -53.5 NC_004684.1 + 2382 0.67 0.803716
Target:  5'- aUGGCCAccUUCGCCGGgu-GCgGCGUg -3'
miRNA:   3'- gGCUGGUa-AAGCGGCUacuCGaCGCA- -5'
19247 3' -53.5 NC_004684.1 + 631 0.67 0.794132
Target:  5'- aCCGcGCCGaggUCGCCGggGuGCUGUa- -3'
miRNA:   3'- -GGC-UGGUaa-AGCGGCuaCuCGACGca -5'
19247 3' -53.5 NC_004684.1 + 47316 0.68 0.764423
Target:  5'- gCCGucACCGUgUCGCCGGUGuGg-GCGUc -3'
miRNA:   3'- -GGC--UGGUAaAGCGGCUACuCgaCGCA- -5'
19247 3' -53.5 NC_004684.1 + 48934 0.68 0.754237
Target:  5'- cCCGGCCucgUCGCCGAacGGCacgucgGCGg -3'
miRNA:   3'- -GGCUGGuaaAGCGGCUacUCGa-----CGCa -5'
19247 3' -53.5 NC_004684.1 + 49866 0.68 0.751157
Target:  5'- gCGACCAcgUCGuCCGGcgUggcaccgcgcucgcGAGCUGCGUa -3'
miRNA:   3'- gGCUGGUaaAGC-GGCU--A--------------CUCGACGCA- -5'
19247 3' -53.5 NC_004684.1 + 66356 0.68 0.743928
Target:  5'- gCCG-CCAUUUcuggccccaCGCCGc-GAGCUGCGc -3'
miRNA:   3'- -GGCuGGUAAA---------GCGGCuaCUCGACGCa -5'
19247 3' -53.5 NC_004684.1 + 39779 0.69 0.701689
Target:  5'- cCUGGCCGUUcucgaugCGCUGGU-AGCUGCGc -3'
miRNA:   3'- -GGCUGGUAAa------GCGGCUAcUCGACGCa -5'
19247 3' -53.5 NC_004684.1 + 5958 0.69 0.680125
Target:  5'- cCUGGCCg---CGCCGGUGAGCgaccgGCc- -3'
miRNA:   3'- -GGCUGGuaaaGCGGCUACUCGa----CGca -5'
19247 3' -53.5 NC_004684.1 + 65765 0.69 0.680125
Target:  5'- uUGGCCGccgcgCGCCGGUGGGC-GCGc -3'
miRNA:   3'- gGCUGGUaaa--GCGGCUACUCGaCGCa -5'
19247 3' -53.5 NC_004684.1 + 24870 0.69 0.680125
Target:  5'- gCCGACCA---CGgCGGUGAGC-GCGc -3'
miRNA:   3'- -GGCUGGUaaaGCgGCUACUCGaCGCa -5'
19247 3' -53.5 NC_004684.1 + 31591 0.7 0.658379
Target:  5'- aUGACCAccgUCGCCGggGA-CUGCGc -3'
miRNA:   3'- gGCUGGUaa-AGCGGCuaCUcGACGCa -5'
19247 3' -53.5 NC_004684.1 + 55797 0.7 0.647466
Target:  5'- gUGACCGggUgGuCCGGUGAGC-GCGUg -3'
miRNA:   3'- gGCUGGUaaAgC-GGCUACUCGaCGCA- -5'
19247 3' -53.5 NC_004684.1 + 55319 0.7 0.636538
Target:  5'- gCCGAUCGagUUCGCCGAcggcuggcaggUGAGCcugGCGc -3'
miRNA:   3'- -GGCUGGUa-AAGCGGCU-----------ACUCGa--CGCa -5'
19247 3' -53.5 NC_004684.1 + 59023 0.7 0.625606
Target:  5'- cUCGugCuugUCGCCGGUGGGCaGCu- -3'
miRNA:   3'- -GGCugGuaaAGCGGCUACUCGaCGca -5'
19247 3' -53.5 NC_004684.1 + 9293 0.7 0.625606
Target:  5'- cCCGGCCAUgcUCGgcgcgcucCCGGUcGAGCUGCa- -3'
miRNA:   3'- -GGCUGGUAa-AGC--------GGCUA-CUCGACGca -5'
19247 3' -53.5 NC_004684.1 + 29471 0.71 0.614681
Target:  5'- gCGugCA---UGCUGGUGAGCUGCa- -3'
miRNA:   3'- gGCugGUaaaGCGGCUACUCGACGca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.