miRNA display CGI


Results 21 - 40 of 149 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19247 5' -57.4 NC_004684.1 + 14484 0.66 0.689142
Target:  5'- gCCACGccgccguGCUGGCCG-GaCGCuCCuggGUGCa -3'
miRNA:   3'- -GGUGCu------CGACUGGCaC-GCGuGG---CACG- -5'
19247 5' -57.4 NC_004684.1 + 10342 0.66 0.689142
Target:  5'- gCCAcCGcGCUGguGCCGUgGCcCACCGUGa -3'
miRNA:   3'- -GGU-GCuCGAC--UGGCA-CGcGUGGCACg -5'
19247 5' -57.4 NC_004684.1 + 29520 0.66 0.689142
Target:  5'- aC-CGGGUacgGAUCGUGCGCcaAUgGUGCg -3'
miRNA:   3'- gGuGCUCGa--CUGGCACGCG--UGgCACG- -5'
19247 5' -57.4 NC_004684.1 + 23653 0.66 0.689142
Target:  5'- aCCGCu-GCUGACCGgGUaCACCGacgGCc -3'
miRNA:   3'- -GGUGcuCGACUGGCaCGcGUGGCa--CG- -5'
19247 5' -57.4 NC_004684.1 + 43638 0.66 0.689142
Target:  5'- cCCACG-GC---CCGaacUGCGCACCGaGCa -3'
miRNA:   3'- -GGUGCuCGacuGGC---ACGCGUGGCaCG- -5'
19247 5' -57.4 NC_004684.1 + 52897 0.66 0.678662
Target:  5'- gCCACcGGC-GACCG-GCGUgguACCG-GCa -3'
miRNA:   3'- -GGUGcUCGaCUGGCaCGCG---UGGCaCG- -5'
19247 5' -57.4 NC_004684.1 + 19838 0.66 0.678662
Target:  5'- aCgGCGGcGCauGCCGguugccGCGCACCGUGg -3'
miRNA:   3'- -GgUGCU-CGacUGGCa-----CGCGUGGCACg -5'
19247 5' -57.4 NC_004684.1 + 44907 0.66 0.678662
Target:  5'- gCACGuuGGCgu-CgGUGCGCGCCGgGUa -3'
miRNA:   3'- gGUGC--UCGacuGgCACGCGUGGCaCG- -5'
19247 5' -57.4 NC_004684.1 + 42734 0.66 0.678662
Target:  5'- aCCGCcgucGGCgaaGugCaGUGCGCGCCGgaacGCg -3'
miRNA:   3'- -GGUGc---UCGa--CugG-CACGCGUGGCa---CG- -5'
19247 5' -57.4 NC_004684.1 + 20642 0.66 0.67551
Target:  5'- gCGuCGAGCUGACCccagagguccgGCGCaagaucaGCCGUGg -3'
miRNA:   3'- gGU-GCUCGACUGGca---------CGCG-------UGGCACg -5'
19247 5' -57.4 NC_004684.1 + 59483 0.66 0.668142
Target:  5'- uCCACcGGCUGGCUGgcgGC-CACCaggGCa -3'
miRNA:   3'- -GGUGcUCGACUGGCa--CGcGUGGca-CG- -5'
19247 5' -57.4 NC_004684.1 + 12906 0.66 0.668142
Target:  5'- gCCGCcAGCgguGCCG-GUGCGCCGUcgGCc -3'
miRNA:   3'- -GGUGcUCGac-UGGCaCGCGUGGCA--CG- -5'
19247 5' -57.4 NC_004684.1 + 9339 0.66 0.668142
Target:  5'- -gACGAGgaGGCCuccgGUGCGUcCCG-GCg -3'
miRNA:   3'- ggUGCUCgaCUGG----CACGCGuGGCaCG- -5'
19247 5' -57.4 NC_004684.1 + 46687 0.66 0.668142
Target:  5'- -uGCGguGGCgGugCGgugGCGCGCCcuGUGCg -3'
miRNA:   3'- ggUGC--UCGaCugGCa--CGCGUGG--CACG- -5'
19247 5' -57.4 NC_004684.1 + 53370 0.66 0.668142
Target:  5'- gCAgGAcGUUGACCGaguuggGCcacuGCACCGUGUc -3'
miRNA:   3'- gGUgCU-CGACUGGCa-----CG----CGUGGCACG- -5'
19247 5' -57.4 NC_004684.1 + 13151 0.66 0.65759
Target:  5'- cUCGCGucGCUGACgCGUgacGCGCACC-UGg -3'
miRNA:   3'- -GGUGCu-CGACUG-GCA---CGCGUGGcACg -5'
19247 5' -57.4 NC_004684.1 + 3252 0.66 0.65759
Target:  5'- aCCACGcuGCUGGCCuggccggacaucGUGgaCGCACUGcUGCc -3'
miRNA:   3'- -GGUGCu-CGACUGG------------CAC--GCGUGGC-ACG- -5'
19247 5' -57.4 NC_004684.1 + 31399 0.66 0.65759
Target:  5'- cCgGCGGGCaccaccccGACUGUGCGCcagGCC-UGCg -3'
miRNA:   3'- -GgUGCUCGa-------CUGGCACGCG---UGGcACG- -5'
19247 5' -57.4 NC_004684.1 + 15566 0.66 0.653362
Target:  5'- aCCAuCGAgaaGCUGACCcgcgagaaggggGCGCGCUcgGUGCg -3'
miRNA:   3'- -GGU-GCU---CGACUGGca----------CGCGUGG--CACG- -5'
19247 5' -57.4 NC_004684.1 + 65432 0.67 0.647016
Target:  5'- gCGCuGcGCUGG-CGUGCGgcgcgcggcCACCGUGCg -3'
miRNA:   3'- gGUG-CuCGACUgGCACGC---------GUGGCACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.