miRNA display CGI


Results 21 - 40 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19248 3' -60.6 NC_004684.1 + 63642 0.66 0.453577
Target:  5'- cGUGUCGCCccacGCCAGCACgUGCa----- -3'
miRNA:   3'- -CACGGCGG----UGGUCGUGgACGaccugu -5'
19248 3' -60.6 NC_004684.1 + 41585 0.66 0.453577
Target:  5'- -gGCCGCCACCcg-GCCaGUUGGugAc -3'
miRNA:   3'- caCGGCGGUGGucgUGGaCGACCugU- -5'
19248 3' -60.6 NC_004684.1 + 28583 0.66 0.453577
Target:  5'- --aCCGCCagGCgGGCACCgccGCUGGAa- -3'
miRNA:   3'- cacGGCGG--UGgUCGUGGa--CGACCUgu -5'
19248 3' -60.6 NC_004684.1 + 53399 0.66 0.453577
Target:  5'- cGUGCCGUCGggcaacugcuCCAGgucuGCCUGCgucaGGACGa -3'
miRNA:   3'- -CACGGCGGU----------GGUCg---UGGACGa---CCUGU- -5'
19248 3' -60.6 NC_004684.1 + 11951 0.66 0.444059
Target:  5'- -gGUCGCCAgCCuGGCACCUGC-GG-CGc -3'
miRNA:   3'- caCGGCGGU-GG-UCGUGGACGaCCuGU- -5'
19248 3' -60.6 NC_004684.1 + 2531 0.66 0.444059
Target:  5'- cUGCgGaCgCugCGGCACCUGCgUGGAg- -3'
miRNA:   3'- cACGgC-G-GugGUCGUGGACG-ACCUgu -5'
19248 3' -60.6 NC_004684.1 + 401 0.66 0.444059
Target:  5'- -cGCCGUgGCgGGCAa--GCUGGGCGa -3'
miRNA:   3'- caCGGCGgUGgUCGUggaCGACCUGU- -5'
19248 3' -60.6 NC_004684.1 + 10137 0.66 0.443113
Target:  5'- -cGCCGCUgaccucgugcucaGCCAGcCGCC-GCUGGcCAc -3'
miRNA:   3'- caCGGCGG-------------UGGUC-GUGGaCGACCuGU- -5'
19248 3' -60.6 NC_004684.1 + 37126 0.66 0.440284
Target:  5'- -gGCgUGCCGCCAGCGCaCUGCgccgccaguucugGGAg- -3'
miRNA:   3'- caCG-GCGGUGGUCGUG-GACGa------------CCUgu -5'
19248 3' -60.6 NC_004684.1 + 17065 0.66 0.434655
Target:  5'- -gGCCGCCcgccugGCCGggcGCACC-GaCUGGGCAc -3'
miRNA:   3'- caCGGCGG------UGGU---CGUGGaC-GACCUGU- -5'
19248 3' -60.6 NC_004684.1 + 32954 0.66 0.434655
Target:  5'- -gGCCGCUcgGgCAGCACaCUGCUguccucGGGCGc -3'
miRNA:   3'- caCGGCGG--UgGUCGUG-GACGA------CCUGU- -5'
19248 3' -60.6 NC_004684.1 + 56911 0.66 0.434655
Target:  5'- -gGCCGCCAUCGuGUccuCCUGcCUGGAg- -3'
miRNA:   3'- caCGGCGGUGGU-CGu--GGAC-GACCUgu -5'
19248 3' -60.6 NC_004684.1 + 19776 0.66 0.43372
Target:  5'- gGUGcCCGCCGggGGCgacaagauggcggGCCUGCUGGcCAa -3'
miRNA:   3'- -CAC-GGCGGUggUCG-------------UGGACGACCuGU- -5'
19248 3' -60.6 NC_004684.1 + 6140 0.66 0.425366
Target:  5'- --aCCGCCGCCauGGC-CCUGCUGuuCAa -3'
miRNA:   3'- cacGGCGGUGG--UCGuGGACGACcuGU- -5'
19248 3' -60.6 NC_004684.1 + 57875 0.66 0.425366
Target:  5'- -gGCaCGCCagACCGGUGCUgGCUGGugGc -3'
miRNA:   3'- caCG-GCGG--UGGUCGUGGaCGACCugU- -5'
19248 3' -60.6 NC_004684.1 + 27123 0.66 0.425366
Target:  5'- -gGCCGUUGCCGGgaCGCUgaucgacgUGCUGGGCGa -3'
miRNA:   3'- caCGGCGGUGGUC--GUGG--------ACGACCUGU- -5'
19248 3' -60.6 NC_004684.1 + 18663 0.66 0.425366
Target:  5'- cUGCCacaucGCCACCGGCAagcGCUGG-CAg -3'
miRNA:   3'- cACGG-----CGGUGGUCGUggaCGACCuGU- -5'
19248 3' -60.6 NC_004684.1 + 10338 0.66 0.425366
Target:  5'- -gGCCGCCAUCGacccCGCCggGgaGGACAu -3'
miRNA:   3'- caCGGCGGUGGUc---GUGGa-CgaCCUGU- -5'
19248 3' -60.6 NC_004684.1 + 14398 0.66 0.425366
Target:  5'- -gGCCGUCGCCGcaggagaugcuGCGCgaaCUGCUGGcCAa -3'
miRNA:   3'- caCGGCGGUGGU-----------CGUG---GACGACCuGU- -5'
19248 3' -60.6 NC_004684.1 + 2056 0.66 0.425366
Target:  5'- -gGCCGCCAUCGugGCCUGcCUGG-CGc -3'
miRNA:   3'- caCGGCGGUGGUcgUGGAC-GACCuGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.