miRNA display CGI


Results 21 - 40 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19249 3' -60.1 NC_004684.1 + 29400 0.66 0.557988
Target:  5'- gCCGAGgacaaggccaucaaCGUcGACCCcaucgugcGCccGGACCCGCugGg -3'
miRNA:   3'- -GGCUC--------------GCA-CUGGG--------CG--UCUGGGCGugC- -5'
19249 3' -60.1 NC_004684.1 + 41861 0.66 0.550888
Target:  5'- cUCG-GCGUGGuCUgguacuggaCGCAGGCCCGCgACa -3'
miRNA:   3'- -GGCuCGCACU-GG---------GCGUCUGGGCG-UGc -5'
19249 3' -60.1 NC_004684.1 + 12744 0.66 0.550888
Target:  5'- gCCGAG-GUcGACgCC-CucuuGGCCCGCGCGg -3'
miRNA:   3'- -GGCUCgCA-CUG-GGcGu---CUGGGCGUGC- -5'
19249 3' -60.1 NC_004684.1 + 49525 0.66 0.550888
Target:  5'- gCCcAGCGUGcACCCgGCGGugU-GCGCGg -3'
miRNA:   3'- -GGcUCGCAC-UGGG-CGUCugGgCGUGC- -5'
19249 3' -60.1 NC_004684.1 + 15525 0.66 0.550888
Target:  5'- gCCGGGCGcuggaggcgcUGAUCCGCguugguGGACCgGCGa- -3'
miRNA:   3'- -GGCUCGC----------ACUGGGCG------UCUGGgCGUgc -5'
19249 3' -60.1 NC_004684.1 + 3859 0.66 0.550887
Target:  5'- gCCGAGCGccacGCCCGC-GAgCUGCgACGc -3'
miRNA:   3'- -GGCUCGCac--UGGGCGuCUgGGCG-UGC- -5'
19249 3' -60.1 NC_004684.1 + 14285 0.66 0.550887
Target:  5'- cCCGcGUgauGUGGCCuUGCAGGCCgcCGCGCa -3'
miRNA:   3'- -GGCuCG---CACUGG-GCGUCUGG--GCGUGc -5'
19249 3' -60.1 NC_004684.1 + 54604 0.66 0.547853
Target:  5'- gCGGGgGUGccguuguccucguuGgCCGCAGGCgcagCCGCGCGg -3'
miRNA:   3'- gGCUCgCAC--------------UgGGCGUCUG----GGCGUGC- -5'
19249 3' -60.1 NC_004684.1 + 16929 0.66 0.540793
Target:  5'- cCCGAacgcauGCGUGcguucAUCCGCgAGGCCUGCaaGCGg -3'
miRNA:   3'- -GGCU------CGCAC-----UGGGCG-UCUGGGCG--UGC- -5'
19249 3' -60.1 NC_004684.1 + 22159 0.66 0.540793
Target:  5'- gCCGGGCcUGACCaGCAccaaGCgCCGCAUGg -3'
miRNA:   3'- -GGCUCGcACUGGgCGUc---UG-GGCGUGC- -5'
19249 3' -60.1 NC_004684.1 + 30032 0.66 0.540793
Target:  5'- gCUGAGCGUGAa-CGCGcGCUCGC-CGg -3'
miRNA:   3'- -GGCUCGCACUggGCGUcUGGGCGuGC- -5'
19249 3' -60.1 NC_004684.1 + 1535 0.66 0.530761
Target:  5'- uCCGAG-GUGGCCaccaGCGGcCCC-CACa -3'
miRNA:   3'- -GGCUCgCACUGGg---CGUCuGGGcGUGc -5'
19249 3' -60.1 NC_004684.1 + 21295 0.67 0.520797
Target:  5'- aCGAGaagGACCUGCgcuGGGCCaucaaGCACGg -3'
miRNA:   3'- gGCUCgcaCUGGGCG---UCUGGg----CGUGC- -5'
19249 3' -60.1 NC_004684.1 + 63239 0.67 0.520797
Target:  5'- gCCGGGCGUcGGCCCgaGCAG-CuuGUccACGa -3'
miRNA:   3'- -GGCUCGCA-CUGGG--CGUCuGggCG--UGC- -5'
19249 3' -60.1 NC_004684.1 + 9463 0.67 0.520797
Target:  5'- uCCGGGCGcUGgaGCUgGCGGGCaaGCGCa -3'
miRNA:   3'- -GGCUCGC-AC--UGGgCGUCUGggCGUGc -5'
19249 3' -60.1 NC_004684.1 + 20037 0.67 0.520797
Target:  5'- gCCGGGUccuaccGUGGCCUGguGGCCaUGCuCGa -3'
miRNA:   3'- -GGCUCG------CACUGGGCguCUGG-GCGuGC- -5'
19249 3' -60.1 NC_004684.1 + 63288 0.67 0.520797
Target:  5'- gCCGGGCGUaucCCUGC--ACCaCGCGCGa -3'
miRNA:   3'- -GGCUCGCAcu-GGGCGucUGG-GCGUGC- -5'
19249 3' -60.1 NC_004684.1 + 37543 0.67 0.520797
Target:  5'- gCG-GCGaUGACCCGCcgguGGACCCGg--- -3'
miRNA:   3'- gGCuCGC-ACUGGGCG----UCUGGGCgugc -5'
19249 3' -60.1 NC_004684.1 + 5543 0.67 0.520797
Target:  5'- cCCGccaGGCuGUGACCCuugcccucacgGUGGGCgCGCGCGa -3'
miRNA:   3'- -GGC---UCG-CACUGGG-----------CGUCUGgGCGUGC- -5'
19249 3' -60.1 NC_004684.1 + 12989 0.67 0.510907
Target:  5'- aCCGAGCGccgGGCCgGguGGauuauguccCCCGaCGCGc -3'
miRNA:   3'- -GGCUCGCa--CUGGgCguCU---------GGGC-GUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.