miRNA display CGI


Results 21 - 40 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19250 3' -61.3 NC_004684.1 + 24987 0.66 0.444571
Target:  5'- gCCCGCguCGGCGcGUUGGgg-UCGGCg -3'
miRNA:   3'- -GGGCGguGCCGCuCGACCgagAGCUG- -5'
19250 3' -61.3 NC_004684.1 + 22333 0.66 0.444571
Target:  5'- gCCCGCCACccgguacaGGCGguGGCggcGGCgg-CGGCg -3'
miRNA:   3'- -GGGCGGUG--------CCGC--UCGa--CCGagaGCUG- -5'
19250 3' -61.3 NC_004684.1 + 40114 0.66 0.444571
Target:  5'- gCCGUaGCGG-GcGCUGGCggcCUCGGCa -3'
miRNA:   3'- gGGCGgUGCCgCuCGACCGa--GAGCUG- -5'
19250 3' -61.3 NC_004684.1 + 55351 0.66 0.444571
Target:  5'- gCCGCCuccugcUGGuCGAGCaUGGC-CUUGGCc -3'
miRNA:   3'- gGGCGGu-----GCC-GCUCG-ACCGaGAGCUG- -5'
19250 3' -61.3 NC_004684.1 + 55797 0.66 0.444571
Target:  5'- gCCGUCGuccaggcgcacCGGCGGGCUGGUguggaaCUCG-Cg -3'
miRNA:   3'- gGGCGGU-----------GCCGCUCGACCGa-----GAGCuG- -5'
19250 3' -61.3 NC_004684.1 + 41339 0.66 0.444571
Target:  5'- aCCGCCgACGGcCGGGCcaaggccacccGGUUCaUCGACc -3'
miRNA:   3'- gGGCGG-UGCC-GCUCGa----------CCGAG-AGCUG- -5'
19250 3' -61.3 NC_004684.1 + 39444 0.66 0.444571
Target:  5'- cCCCagGCCGaGGCGuGC-GGCUacCUCGGCu -3'
miRNA:   3'- -GGG--CGGUgCCGCuCGaCCGA--GAGCUG- -5'
19250 3' -61.3 NC_004684.1 + 45079 0.66 0.444571
Target:  5'- --gGCCACGGgGAGCaucGGggUUCGGCa -3'
miRNA:   3'- gggCGGUGCCgCUCGa--CCgaGAGCUG- -5'
19250 3' -61.3 NC_004684.1 + 67001 0.66 0.443648
Target:  5'- gCCCGCCACGGCGgugauccugaccGGCaccacgaUGGC-CU-GGCc -3'
miRNA:   3'- -GGGCGGUGCCGC------------UCG-------ACCGaGAgCUG- -5'
19250 3' -61.3 NC_004684.1 + 4014 0.67 0.435396
Target:  5'- gCCGCCAuCGGCuGGCgcgucGGCcgCUCGGu -3'
miRNA:   3'- gGGCGGU-GCCGcUCGa----CCGa-GAGCUg -5'
19250 3' -61.3 NC_004684.1 + 56851 0.67 0.433574
Target:  5'- cCCCGCCGacgaugaagcuacCGGCGAGC-GGUgcgCcugaccgUCGGCg -3'
miRNA:   3'- -GGGCGGU-------------GCCGCUCGaCCGa--G-------AGCUG- -5'
19250 3' -61.3 NC_004684.1 + 8746 0.67 0.432665
Target:  5'- gCCGCCGCgcccGGCGAGCUGaucaagaacgucacGCacuugaagUUCGACa -3'
miRNA:   3'- gGGCGGUG----CCGCUCGAC--------------CGa-------GAGCUG- -5'
19250 3' -61.3 NC_004684.1 + 46286 0.67 0.426331
Target:  5'- gUCGCgGCGGcCGAGCgcguugcGGCgCUUGGCg -3'
miRNA:   3'- gGGCGgUGCC-GCUCGa------CCGaGAGCUG- -5'
19250 3' -61.3 NC_004684.1 + 47908 0.67 0.426331
Target:  5'- --gGCCACGGUcGGC-GGC-CUCGGCc -3'
miRNA:   3'- gggCGGUGCCGcUCGaCCGaGAGCUG- -5'
19250 3' -61.3 NC_004684.1 + 33101 0.67 0.426331
Target:  5'- gCUGCCGacgcaGGCGcucgcGCUGGCcaaggugCUCGGCa -3'
miRNA:   3'- gGGCGGUg----CCGCu----CGACCGa------GAGCUG- -5'
19250 3' -61.3 NC_004684.1 + 11828 0.67 0.426331
Target:  5'- gCCGCUgucCGGCGA-CUGGCgcgacUUCGGCa -3'
miRNA:   3'- gGGCGGu--GCCGCUcGACCGa----GAGCUG- -5'
19250 3' -61.3 NC_004684.1 + 9442 0.67 0.426331
Target:  5'- aCCaGCCGCaGCGAGCaccgcaGGCggUCGGCa -3'
miRNA:   3'- gGG-CGGUGcCGCUCGa-----CCGagAGCUG- -5'
19250 3' -61.3 NC_004684.1 + 9142 0.67 0.426331
Target:  5'- aCCGCCuCGGCGcGGCaGGUg--CGGCa -3'
miRNA:   3'- gGGCGGuGCCGC-UCGaCCGagaGCUG- -5'
19250 3' -61.3 NC_004684.1 + 12006 0.67 0.425431
Target:  5'- cCCCGCaggacuuCGCGGCGGcGgUGGCcaaggccaugCUCGACc -3'
miRNA:   3'- -GGGCG-------GUGCCGCU-CgACCGa---------GAGCUG- -5'
19250 3' -61.3 NC_004684.1 + 60917 0.67 0.408544
Target:  5'- cUCgGCCACGGCGucGCacGC-CUCGGCc -3'
miRNA:   3'- -GGgCGGUGCCGCu-CGacCGaGAGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.