miRNA display CGI


Results 21 - 40 of 112 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19250 5' -57.3 NC_004684.1 + 43685 0.66 0.62015
Target:  5'- cGGCGucgagguccGACACCGCCugGGCAgcuUGgaugCGCUg -3'
miRNA:   3'- uCCGC---------UUGUGGCGG--UCGU---ACa---GCGAg -5'
19250 5' -57.3 NC_004684.1 + 33517 0.66 0.62015
Target:  5'- cGGGCGGugGCgGCUAuGCGggGUCGUa- -3'
miRNA:   3'- -UCCGCUugUGgCGGU-CGUa-CAGCGag -5'
19250 5' -57.3 NC_004684.1 + 65837 0.66 0.62015
Target:  5'- cGGCGGcucacagguGCACCGCaugcgAGCGcggGUCGCgUCg -3'
miRNA:   3'- uCCGCU---------UGUGGCGg----UCGUa--CAGCG-AG- -5'
19250 5' -57.3 NC_004684.1 + 4662 0.66 0.62015
Target:  5'- cGGUGuACACCGuCCuGCGUGccuugcaGCUCa -3'
miRNA:   3'- uCCGCuUGUGGC-GGuCGUACag-----CGAG- -5'
19250 5' -57.3 NC_004684.1 + 53469 0.66 0.609339
Target:  5'- -uGCGAGcCGCCaGCCAGC-UGUCGaUCu -3'
miRNA:   3'- ucCGCUU-GUGG-CGGUCGuACAGCgAG- -5'
19250 5' -57.3 NC_004684.1 + 9555 0.66 0.609339
Target:  5'- cGGGCGggUACCggcgGCCAGCAc--CGC-Cg -3'
miRNA:   3'- -UCCGCuuGUGG----CGGUCGUacaGCGaG- -5'
19250 5' -57.3 NC_004684.1 + 8044 0.66 0.609339
Target:  5'- uGGCGGuccucCAgCGCCAGCAggGUgCgGCUCa -3'
miRNA:   3'- uCCGCUu----GUgGCGGUCGUa-CA-G-CGAG- -5'
19250 5' -57.3 NC_004684.1 + 9451 0.66 0.609339
Target:  5'- -aGCGAGCACCGCaGGCG-GUCGg-- -3'
miRNA:   3'- ucCGCUUGUGGCGgUCGUaCAGCgag -5'
19250 5' -57.3 NC_004684.1 + 29856 0.66 0.609339
Target:  5'- cGGCGggUcaucGCCGCC-GCA-GUCGUg- -3'
miRNA:   3'- uCCGCuuG----UGGCGGuCGUaCAGCGag -5'
19250 5' -57.3 NC_004684.1 + 21616 0.66 0.609339
Target:  5'- aGGGCGAccgccuggagguGCGCCuGCCaaccgAGCAgg-CGCUCu -3'
miRNA:   3'- -UCCGCU------------UGUGG-CGG-----UCGUacaGCGAG- -5'
19250 5' -57.3 NC_004684.1 + 41853 0.67 0.602861
Target:  5'- gAGGCucuuGAGCACCGacCCGGCGUcggcggucgagaacaGcCGCUCg -3'
miRNA:   3'- -UCCG----CUUGUGGC--GGUCGUA---------------CaGCGAG- -5'
19250 5' -57.3 NC_004684.1 + 49028 0.67 0.598547
Target:  5'- cGGUGAugucgagcgGCACCGCgCcGCcgGUCgGCUCc -3'
miRNA:   3'- uCCGCU---------UGUGGCG-GuCGuaCAG-CGAG- -5'
19250 5' -57.3 NC_004684.1 + 54486 0.67 0.598547
Target:  5'- cGGCGcaccGGCACCGCUGGCGgcgagCGCa- -3'
miRNA:   3'- uCCGC----UUGUGGCGGUCGUaca--GCGag -5'
19250 5' -57.3 NC_004684.1 + 47629 0.67 0.598547
Target:  5'- cGGCGGGCACCggcagGCCGcGCAgGUacugcaCGCUCc -3'
miRNA:   3'- uCCGCUUGUGG-----CGGU-CGUaCA------GCGAG- -5'
19250 5' -57.3 NC_004684.1 + 42445 0.67 0.587783
Target:  5'- uGGCGGucaucGCGCCGCUA-C-UGUCGUUCc -3'
miRNA:   3'- uCCGCU-----UGUGGCGGUcGuACAGCGAG- -5'
19250 5' -57.3 NC_004684.1 + 12204 0.67 0.587783
Target:  5'- -aGCGc-CGCCGCCAGCGgugCGUUCu -3'
miRNA:   3'- ucCGCuuGUGGCGGUCGUacaGCGAG- -5'
19250 5' -57.3 NC_004684.1 + 15691 0.67 0.577054
Target:  5'- cGGCGGcaccgACGCCaCCGGCAUcgUGCUCc -3'
miRNA:   3'- uCCGCU-----UGUGGcGGUCGUAcaGCGAG- -5'
19250 5' -57.3 NC_004684.1 + 41205 0.67 0.577054
Target:  5'- aAGGCGAcCAgaCGCCAGCGgugCGCg- -3'
miRNA:   3'- -UCCGCUuGUg-GCGGUCGUacaGCGag -5'
19250 5' -57.3 NC_004684.1 + 43857 0.67 0.577054
Target:  5'- cAGGC--GCAUCGgCAGCAUGUgCGC-Ca -3'
miRNA:   3'- -UCCGcuUGUGGCgGUCGUACA-GCGaG- -5'
19250 5' -57.3 NC_004684.1 + 47938 0.67 0.56637
Target:  5'- cGGGCcacCGCCGCCcgGGCAUGggCGCa- -3'
miRNA:   3'- -UCCGcuuGUGGCGG--UCGUACa-GCGag -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.