miRNA display CGI


Results 21 - 40 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19251 3' -59.5 NC_004684.1 + 7906 0.67 0.492658
Target:  5'- cCGUUGgggccGCUGGCcGCGCagGUgguggacaucGCCGCc -3'
miRNA:   3'- -GCAACa----CGACCGcCGCGagCA----------CGGCG- -5'
19251 3' -59.5 NC_004684.1 + 19970 0.67 0.492658
Target:  5'- gGUgGUGCcGGagcaccaGGUGCgcaacaaCGUGCCGCg -3'
miRNA:   3'- gCAaCACGaCCg------CCGCGa------GCACGGCG- -5'
19251 3' -59.5 NC_004684.1 + 53755 0.67 0.482835
Target:  5'- aCGcagGUGCgcGGCGGCGaaCGUG-CGCa -3'
miRNA:   3'- -GCaa-CACGa-CCGCCGCgaGCACgGCG- -5'
19251 3' -59.5 NC_004684.1 + 59155 0.67 0.473107
Target:  5'- ----aUGUUGuCGGCGCUgGUGCCuGCg -3'
miRNA:   3'- gcaacACGACcGCCGCGAgCACGG-CG- -5'
19251 3' -59.5 NC_004684.1 + 51701 0.67 0.463479
Target:  5'- ----aUGCcGGUGGCGUcgGUGCCGCc -3'
miRNA:   3'- gcaacACGaCCGCCGCGagCACGGCG- -5'
19251 3' -59.5 NC_004684.1 + 46102 0.67 0.463479
Target:  5'- gCGUUGcGCagauacGGCcgGGCGCgCGUGCCGg -3'
miRNA:   3'- -GCAACaCGa-----CCG--CCGCGaGCACGGCg -5'
19251 3' -59.5 NC_004684.1 + 14494 0.67 0.463479
Target:  5'- ---cGUGCUGGcCGGaCGCUCcuggGUGCaUGCc -3'
miRNA:   3'- gcaaCACGACC-GCC-GCGAG----CACG-GCG- -5'
19251 3' -59.5 NC_004684.1 + 51751 0.67 0.463478
Target:  5'- gCGgcGUGCUccaGGCGCuugUCGUGCuCGCg -3'
miRNA:   3'- -GCaaCACGAccgCCGCG---AGCACG-GCG- -5'
19251 3' -59.5 NC_004684.1 + 61527 0.68 0.453954
Target:  5'- aGUgacGUGCa---GGCGCUggCGUGCCGCu -3'
miRNA:   3'- gCAa--CACGaccgCCGCGA--GCACGGCG- -5'
19251 3' -59.5 NC_004684.1 + 33884 0.68 0.453954
Target:  5'- aGgcgGUGCgGGCGGUGC-CGgugGgCGCg -3'
miRNA:   3'- gCaa-CACGaCCGCCGCGaGCa--CgGCG- -5'
19251 3' -59.5 NC_004684.1 + 51264 0.68 0.453007
Target:  5'- uGUUGaugccgaUGCUGGCGGCGUaggCGU-CCaGCu -3'
miRNA:   3'- gCAAC-------ACGACCGCCGCGa--GCAcGG-CG- -5'
19251 3' -59.5 NC_004684.1 + 5042 0.68 0.444537
Target:  5'- gGUgcgcagGCUGGCGcGCGCU-GUGCUGg -3'
miRNA:   3'- gCAaca---CGACCGC-CGCGAgCACGGCg -5'
19251 3' -59.5 NC_004684.1 + 23737 0.68 0.4408
Target:  5'- -----cGCUGGCGGCGCacugcUCGgugcgcaguucggGCCGUg -3'
miRNA:   3'- gcaacaCGACCGCCGCG-----AGCa------------CGGCG- -5'
19251 3' -59.5 NC_004684.1 + 49113 0.68 0.43523
Target:  5'- gGUcgGUGCcagcaGGCGGcCGggCGUGCCGUu -3'
miRNA:   3'- gCAa-CACGa----CCGCC-GCgaGCACGGCG- -5'
19251 3' -59.5 NC_004684.1 + 65109 0.68 0.43523
Target:  5'- gCGUcgUGgcccagGCUGGCGGCaauGCcCGccGCCGCg -3'
miRNA:   3'- -GCA--ACa-----CGACCGCCG---CGaGCa-CGGCG- -5'
19251 3' -59.5 NC_004684.1 + 45303 0.68 0.43523
Target:  5'- gCGcUGUcGUUGGCGGCGC--GUGCgGUg -3'
miRNA:   3'- -GCaACA-CGACCGCCGCGagCACGgCG- -5'
19251 3' -59.5 NC_004684.1 + 62970 0.68 0.43523
Target:  5'- uGgcGUGCUcGGUGGUGCgcaCGUGgCCGg -3'
miRNA:   3'- gCaaCACGA-CCGCCGCGa--GCAC-GGCg -5'
19251 3' -59.5 NC_004684.1 + 17242 0.68 0.41696
Target:  5'- ---gGUGCUgacgaaaugacGGCGGCGCUgGUcCUGCa -3'
miRNA:   3'- gcaaCACGA-----------CCGCCGCGAgCAcGGCG- -5'
19251 3' -59.5 NC_004684.1 + 18351 0.68 0.41696
Target:  5'- -----aGCcgaccGGCGGCGCg-GUGCCGCu -3'
miRNA:   3'- gcaacaCGa----CCGCCGCGagCACGGCG- -5'
19251 3' -59.5 NC_004684.1 + 43472 0.68 0.408002
Target:  5'- ---gGUGC-GGCGGCaGCagGUGCgGCg -3'
miRNA:   3'- gcaaCACGaCCGCCG-CGagCACGgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.