miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19252 3' -60.5 NC_004684.1 + 174 0.68 0.365332
Target:  5'- gACCGGGUugGuCGGGACcaccaccaaGGUGGCCcuGGCAa -3'
miRNA:   3'- -UGGCCCA--C-GUCCUG---------CCACUGG--UCGUa -5'
19252 3' -60.5 NC_004684.1 + 1388 0.67 0.399686
Target:  5'- uCCGGGUGgGGcGGCGGcuACCGGUAc -3'
miRNA:   3'- uGGCCCACgUC-CUGCCacUGGUCGUa -5'
19252 3' -60.5 NC_004684.1 + 2620 0.67 0.417621
Target:  5'- uCUGGaaGCAGG-CGGUGGCCAacGCAUg -3'
miRNA:   3'- uGGCCcaCGUCCuGCCACUGGU--CGUA- -5'
19252 3' -60.5 NC_004684.1 + 3047 0.66 0.436036
Target:  5'- gACCGGGUucaAGGACG-UGACCAaGCu- -3'
miRNA:   3'- -UGGCCCAcg-UCCUGCcACUGGU-CGua -5'
19252 3' -60.5 NC_004684.1 + 3655 0.66 0.435105
Target:  5'- cGCCcGGUGcCGGGucaucguACGGUGGcCCGGCAc -3'
miRNA:   3'- -UGGcCCAC-GUCC-------UGCCACU-GGUCGUa -5'
19252 3' -60.5 NC_004684.1 + 4787 0.66 0.454912
Target:  5'- uCCgGGGUGCGcGACGccaUGACCGGCGc -3'
miRNA:   3'- uGG-CCCACGUcCUGCc--ACUGGUCGUa -5'
19252 3' -60.5 NC_004684.1 + 5893 0.66 0.436036
Target:  5'- gACCGGGUgGCGGcGGCGcUGAUCGcGCAc -3'
miRNA:   3'- -UGGCCCA-CGUC-CUGCcACUGGU-CGUa -5'
19252 3' -60.5 NC_004684.1 + 7428 0.66 0.454912
Target:  5'- uCCGGGUGCGGcACGaGcGccGCCAGCAc -3'
miRNA:   3'- uGGCCCACGUCcUGC-CaC--UGGUCGUa -5'
19252 3' -60.5 NC_004684.1 + 9016 0.67 0.417621
Target:  5'- cGCgCGGugccGUGCGGGGCGGcaACCGGCGc -3'
miRNA:   3'- -UG-GCC----CACGUCCUGCCacUGGUCGUa -5'
19252 3' -60.5 NC_004684.1 + 9537 0.69 0.302949
Target:  5'- uGCCGGGacgcugGCAaucGGGCGGguaccggcGGCCAGCAc -3'
miRNA:   3'- -UGGCCCa-----CGU---CCUGCCa-------CUGGUCGUa -5'
19252 3' -60.5 NC_004684.1 + 14088 0.66 0.484028
Target:  5'- gACCaGGGUGacCGGGugGuGUGGCuCAGCc- -3'
miRNA:   3'- -UGG-CCCAC--GUCCugC-CACUG-GUCGua -5'
19252 3' -60.5 NC_004684.1 + 15524 0.68 0.360357
Target:  5'- gGCCGGGcGCuGGAggcgcugauccgcguUGGUgGACCGGCGa -3'
miRNA:   3'- -UGGCCCaCGuCCU---------------GCCA-CUGGUCGUa -5'
19252 3' -60.5 NC_004684.1 + 17454 0.66 0.478132
Target:  5'- uCCGGGUGCccGACGGUGuggaguugccguccaACCugGGCGc -3'
miRNA:   3'- uGGCCCACGucCUGCCAC---------------UGG--UCGUa -5'
19252 3' -60.5 NC_004684.1 + 19265 0.69 0.325339
Target:  5'- cACCGGGccgacCGGGACGGUgGACCcgauGCAg -3'
miRNA:   3'- -UGGCCCac---GUCCUGCCA-CUGGu---CGUa -5'
19252 3' -60.5 NC_004684.1 + 19544 0.7 0.26177
Target:  5'- -gCGGGUGCGccGGGCGGUG-CCAGg-- -3'
miRNA:   3'- ugGCCCACGU--CCUGCCACuGGUCgua -5'
19252 3' -60.5 NC_004684.1 + 19605 0.71 0.236928
Target:  5'- gGCCGaGGUGCuGG-CGGUGACgcuCGGCGa -3'
miRNA:   3'- -UGGC-CCACGuCCuGCCACUG---GUCGUa -5'
19252 3' -60.5 NC_004684.1 + 22832 0.7 0.249093
Target:  5'- cCCGgcGGUGCAGGcCGGgcuggccaaGACCAGCAa -3'
miRNA:   3'- uGGC--CCACGUCCuGCCa--------CUGGUCGUa -5'
19252 3' -60.5 NC_004684.1 + 27029 0.7 0.249093
Target:  5'- cACCGGGUGCcGGugGcauuGUGuCCAGCc- -3'
miRNA:   3'- -UGGCCCACGuCCugC----CACuGGUCGua -5'
19252 3' -60.5 NC_004684.1 + 28103 0.69 0.316989
Target:  5'- cACCGGGUGguGcGGuucgaggccuugcUGGUGGCCuGCAc -3'
miRNA:   3'- -UGGCCCACguC-CU-------------GCCACUGGuCGUa -5'
19252 3' -60.5 NC_004684.1 + 29736 0.69 0.302949
Target:  5'- cACCGGGUcgauGCcugaccGGGCGGccaUGGCCAGCGc -3'
miRNA:   3'- -UGGCCCA----CGu-----CCUGCC---ACUGGUCGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.