Results 21 - 40 of 70 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19252 | 5' | -61.2 | NC_004684.1 | + | 42087 | 0.66 | 0.469663 |
Target: 5'- -aGGGCcGA-CgaacCGCCGcCGCCUGGUGu -3' miRNA: 3'- cgUCCGaCUaGa---GCGGC-GCGGGCCAC- -5' |
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19252 | 5' | -61.2 | NC_004684.1 | + | 11164 | 0.66 | 0.479262 |
Target: 5'- cGCAGGCUGAcCgccugcaugCGCCGCuCCCa--- -3' miRNA: 3'- -CGUCCGACUaGa--------GCGGCGcGGGccac -5' |
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19252 | 5' | -61.2 | NC_004684.1 | + | 39140 | 0.66 | 0.479262 |
Target: 5'- cCAGGCUGGccgggUCcaccgCGCUGUGCuCCgGGUGg -3' miRNA: 3'- cGUCCGACU-----AGa----GCGGCGCG-GG-CCAC- -5' |
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19252 | 5' | -61.2 | NC_004684.1 | + | 43877 | 0.66 | 0.441474 |
Target: 5'- aGCAGGCUGGUgaCGCCggacaGCGUcuuccaggCCGGa- -3' miRNA: 3'- -CGUCCGACUAgaGCGG-----CGCG--------GGCCac -5' |
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19252 | 5' | -61.2 | NC_004684.1 | + | 55478 | 0.66 | 0.479262 |
Target: 5'- gGCccuGGCUG-UCgguggUGCCGCGCacguugaaucCCGGUGu -3' miRNA: 3'- -CGu--CCGACuAGa----GCGGCGCG----------GGCCAC- -5' |
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19252 | 5' | -61.2 | NC_004684.1 | + | 62401 | 0.66 | 0.479262 |
Target: 5'- cCGGGCccuUGcccUCgCGCUGCGCCCaGGUGc -3' miRNA: 3'- cGUCCG---ACu--AGaGCGGCGCGGG-CCAC- -5' |
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19252 | 5' | -61.2 | NC_004684.1 | + | 22781 | 0.67 | 0.379648 |
Target: 5'- --cGGCg---CUC-CCGCGUCCGGUGa -3' miRNA: 3'- cguCCGacuaGAGcGGCGCGGGCCAC- -5' |
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19252 | 5' | -61.2 | NC_004684.1 | + | 47604 | 0.67 | 0.379648 |
Target: 5'- aGCAGGCccgccAUCUUGUCGCcCCCGGc- -3' miRNA: 3'- -CGUCCGac---UAGAGCGGCGcGGGCCac -5' |
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19252 | 5' | -61.2 | NC_004684.1 | + | 10180 | 0.67 | 0.379648 |
Target: 5'- gGCAGGCUGAgcaccaUCgCGCCGCcgccuuccagGCCCGc-- -3' miRNA: 3'- -CGUCCGACU------AGaGCGGCG----------CGGGCcac -5' |
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19252 | 5' | -61.2 | NC_004684.1 | + | 46773 | 0.67 | 0.396716 |
Target: 5'- cGCuGGCg---CUCGCCgGUGCCCaGGUa -3' miRNA: 3'- -CGuCCGacuaGAGCGG-CGCGGG-CCAc -5' |
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19252 | 5' | -61.2 | NC_004684.1 | + | 62470 | 0.67 | 0.387267 |
Target: 5'- cGCAGGCuuaccggUGAUggUGCCGCcgaGgCCGGUGg -3' miRNA: 3'- -CGUCCG-------ACUAgaGCGGCG---CgGGCCAC- -5' |
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19252 | 5' | -61.2 | NC_004684.1 | + | 60107 | 0.67 | 0.38812 |
Target: 5'- uGCAGuGCggcgaugaacUGGUCUCGCCugGCggccuGCUCGGUGg -3' miRNA: 3'- -CGUC-CG----------ACUAGAGCGG--CG-----CGGGCCAC- -5' |
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19252 | 5' | -61.2 | NC_004684.1 | + | 55261 | 0.67 | 0.396716 |
Target: 5'- aGCAgucGGCUGAUCUCcucaGCCGgGgUCGGg- -3' miRNA: 3'- -CGU---CCGACUAGAG----CGGCgCgGGCCac -5' |
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19252 | 5' | -61.2 | NC_004684.1 | + | 34189 | 0.67 | 0.405433 |
Target: 5'- cCGGGCUG-UC-CGUCGCcaugGCCaCGGUGa -3' miRNA: 3'- cGUCCGACuAGaGCGGCG----CGG-GCCAC- -5' |
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19252 | 5' | -61.2 | NC_004684.1 | + | 60578 | 0.67 | 0.423223 |
Target: 5'- aGCuGGUauGUCUccaCGCCGCGCaCGGUGc -3' miRNA: 3'- -CGuCCGacUAGA---GCGGCGCGgGCCAC- -5' |
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19252 | 5' | -61.2 | NC_004684.1 | + | 55381 | 0.67 | 0.378808 |
Target: 5'- aGCuGGCccgGAUCgcgccggaaaccuUCGCUGCGCUggCGGUGg -3' miRNA: 3'- -CGuCCGa--CUAG-------------AGCGGCGCGG--GCCAC- -5' |
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19252 | 5' | -61.2 | NC_004684.1 | + | 62246 | 0.67 | 0.379648 |
Target: 5'- aGCGcGGCUGGUCcUGCC-CGCUcaugCGGUGg -3' miRNA: 3'- -CGU-CCGACUAGaGCGGcGCGG----GCCAC- -5' |
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19252 | 5' | -61.2 | NC_004684.1 | + | 61929 | 0.67 | 0.383022 |
Target: 5'- uGCGGGCcacggcaccCGCCGgGCCUGGUGc -3' miRNA: 3'- -CGUCCGacuaga---GCGGCgCGGGCCAC- -5' |
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19252 | 5' | -61.2 | NC_004684.1 | + | 45258 | 0.67 | 0.414269 |
Target: 5'- cCAGcGCUGGUCgcgGCCcuuGCGUCCGGUu -3' miRNA: 3'- cGUC-CGACUAGag-CGG---CGCGGGCCAc -5' |
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19252 | 5' | -61.2 | NC_004684.1 | + | 55551 | 0.68 | 0.347019 |
Target: 5'- cGCGccGCUGG-C-CGCCGUgGCCCGGUGg -3' miRNA: 3'- -CGUc-CGACUaGaGCGGCG-CGGGCCAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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