miRNA display CGI


Results 21 - 40 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19252 5' -61.2 NC_004684.1 + 62120 0.66 0.445178
Target:  5'- aCAuGGCgucGGUgaacucguugcacgcCUCGCCGUGCCCGGc- -3'
miRNA:   3'- cGU-CCGa--CUA---------------GAGCGGCGCGGGCCac -5'
19252 5' -61.2 NC_004684.1 + 61822 0.66 0.441474
Target:  5'- --uGGC-GAUUUCGCgCGCGCCCaccGUGa -3'
miRNA:   3'- cguCCGaCUAGAGCG-GCGCGGGc--CAC- -5'
19252 5' -61.2 NC_004684.1 + 38816 0.66 0.441474
Target:  5'- gGCAGGCag--C-CGCCGCaCaCCGGUGg -3'
miRNA:   3'- -CGUCCGacuaGaGCGGCGcG-GGCCAC- -5'
19252 5' -61.2 NC_004684.1 + 43877 0.66 0.441474
Target:  5'- aGCAGGCUGGUgaCGCCggacaGCGUcuuccaggCCGGa- -3'
miRNA:   3'- -CGUCCGACUAgaGCGG-----CGCG--------GGCCac -5'
19252 5' -61.2 NC_004684.1 + 9711 0.66 0.432293
Target:  5'- gGCgAGGUguccUGAUgUgGCCGCuaCCCGGUGa -3'
miRNA:   3'- -CG-UCCG----ACUAgAgCGGCGc-GGGCCAC- -5'
19252 5' -61.2 NC_004684.1 + 39226 0.66 0.432293
Target:  5'- cGCucGCUGAUCUUG-CGCGCCgaCGGg- -3'
miRNA:   3'- -CGucCGACUAGAGCgGCGCGG--GCCac -5'
19252 5' -61.2 NC_004684.1 + 60578 0.67 0.423223
Target:  5'- aGCuGGUauGUCUccaCGCCGCGCaCGGUGc -3'
miRNA:   3'- -CGuCCGacUAGA---GCGGCGCGgGCCAC- -5'
19252 5' -61.2 NC_004684.1 + 45258 0.67 0.414269
Target:  5'- cCAGcGCUGGUCgcgGCCcuuGCGUCCGGUu -3'
miRNA:   3'- cGUC-CGACUAGag-CGG---CGCGGGCCAc -5'
19252 5' -61.2 NC_004684.1 + 34189 0.67 0.405433
Target:  5'- cCGGGCUG-UC-CGUCGCcaugGCCaCGGUGa -3'
miRNA:   3'- cGUCCGACuAGaGCGGCG----CGG-GCCAC- -5'
19252 5' -61.2 NC_004684.1 + 46773 0.67 0.396716
Target:  5'- cGCuGGCg---CUCGCCgGUGCCCaGGUa -3'
miRNA:   3'- -CGuCCGacuaGAGCGG-CGCGGG-CCAc -5'
19252 5' -61.2 NC_004684.1 + 55261 0.67 0.396716
Target:  5'- aGCAgucGGCUGAUCUCcucaGCCGgGgUCGGg- -3'
miRNA:   3'- -CGU---CCGACUAGAG----CGGCgCgGGCCac -5'
19252 5' -61.2 NC_004684.1 + 60107 0.67 0.38812
Target:  5'- uGCAGuGCggcgaugaacUGGUCUCGCCugGCggccuGCUCGGUGg -3'
miRNA:   3'- -CGUC-CG----------ACUAGAGCGG--CG-----CGGGCCAC- -5'
19252 5' -61.2 NC_004684.1 + 62470 0.67 0.387267
Target:  5'- cGCAGGCuuaccggUGAUggUGCCGCcgaGgCCGGUGg -3'
miRNA:   3'- -CGUCCG-------ACUAgaGCGGCG---CgGGCCAC- -5'
19252 5' -61.2 NC_004684.1 + 61929 0.67 0.383022
Target:  5'- uGCGGGCcacggcaccCGCCGgGCCUGGUGc -3'
miRNA:   3'- -CGUCCGacuaga---GCGGCgCGGGCCAC- -5'
19252 5' -61.2 NC_004684.1 + 22781 0.67 0.379648
Target:  5'- --cGGCg---CUC-CCGCGUCCGGUGa -3'
miRNA:   3'- cguCCGacuaGAGcGGCGCGGGCCAC- -5'
19252 5' -61.2 NC_004684.1 + 47604 0.67 0.379648
Target:  5'- aGCAGGCccgccAUCUUGUCGCcCCCGGc- -3'
miRNA:   3'- -CGUCCGac---UAGAGCGGCGcGGGCCac -5'
19252 5' -61.2 NC_004684.1 + 10180 0.67 0.379648
Target:  5'- gGCAGGCUGAgcaccaUCgCGCCGCcgccuuccagGCCCGc-- -3'
miRNA:   3'- -CGUCCGACU------AGaGCGGCG----------CGGGCcac -5'
19252 5' -61.2 NC_004684.1 + 62246 0.67 0.379648
Target:  5'- aGCGcGGCUGGUCcUGCC-CGCUcaugCGGUGg -3'
miRNA:   3'- -CGU-CCGACUAGaGCGGcGCGG----GCCAC- -5'
19252 5' -61.2 NC_004684.1 + 55381 0.67 0.378808
Target:  5'- aGCuGGCccgGAUCgcgccggaaaccuUCGCUGCGCUggCGGUGg -3'
miRNA:   3'- -CGuCCGa--CUAG-------------AGCGGCGCGG--GCCAC- -5'
19252 5' -61.2 NC_004684.1 + 44236 0.68 0.371301
Target:  5'- aGCAGGC---UCUCgccaaaguugGCCGcCGCCCGGa- -3'
miRNA:   3'- -CGUCCGacuAGAG----------CGGC-GCGGGCCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.