miRNA display CGI


Results 21 - 40 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19254 3' -56.8 NC_004684.1 + 48393 0.66 0.630238
Target:  5'- aUCAGCAcccCGGcGuuGGUguGGCGGCGa -3'
miRNA:   3'- -AGUUGUuauGCC-CggCCA--CCGCCGUa -5'
19254 3' -56.8 NC_004684.1 + 43517 0.69 0.472022
Target:  5'- gCGGCAGggGCGGGagCGGUGGCuGCGc -3'
miRNA:   3'- aGUUGUUa-UGCCCg-GCCACCGcCGUa -5'
19254 3' -56.8 NC_004684.1 + 43448 0.66 0.630238
Target:  5'- gUCggUGcgGCGGGCgCGGcagcaggugcGGCGGCAg -3'
miRNA:   3'- -AGuuGUuaUGCCCG-GCCa---------CCGCCGUa -5'
19254 3' -56.8 NC_004684.1 + 40972 0.72 0.326823
Target:  5'- gCGGCGAaccccgcugccaGCGcGCCGGUGGCGGCGUu -3'
miRNA:   3'- aGUUGUUa-----------UGCcCGGCCACCGCCGUA- -5'
19254 3' -56.8 NC_004684.1 + 40731 0.75 0.197855
Target:  5'- cCAGCGcgGCgGGGgCGGUGGCGGUg- -3'
miRNA:   3'- aGUUGUuaUG-CCCgGCCACCGCCGua -5'
19254 3' -56.8 NC_004684.1 + 40579 0.7 0.433061
Target:  5'- cUCggUGAUcucCGGGUCGGUGGUGGuCAg -3'
miRNA:   3'- -AGuuGUUAu--GCCCGGCCACCGCC-GUa -5'
19254 3' -56.8 NC_004684.1 + 40366 0.67 0.58687
Target:  5'- cUUGGCcuUGgGGGCCucggcGGUGGCGGCc- -3'
miRNA:   3'- -AGUUGuuAUgCCCGG-----CCACCGCCGua -5'
19254 3' -56.8 NC_004684.1 + 39926 0.69 0.452312
Target:  5'- aCcuCAAUACGcuugucaccGCCGGUGGUGGCAc -3'
miRNA:   3'- aGuuGUUAUGCc--------CGGCCACCGCCGUa -5'
19254 3' -56.8 NC_004684.1 + 39306 0.68 0.544088
Target:  5'- ---cCGGUGCGGGUCGcGcGGCGGCc- -3'
miRNA:   3'- aguuGUUAUGCCCGGC-CaCCGCCGua -5'
19254 3' -56.8 NC_004684.1 + 39073 0.66 0.684403
Target:  5'- gUCAACAcgaucAUGaaGGCCGGUGGUGccuacGCAc -3'
miRNA:   3'- -AGUUGU-----UAUgcCCGGCCACCGC-----CGUa -5'
19254 3' -56.8 NC_004684.1 + 35650 0.69 0.482038
Target:  5'- cCGAC-GUACaGGGCCGucGGCGGCGg -3'
miRNA:   3'- aGUUGuUAUG-CCCGGCcaCCGCCGUa -5'
19254 3' -56.8 NC_004684.1 + 33884 0.66 0.630238
Target:  5'- -aGGCGGUGCGGG-CGGUGcCGGUg- -3'
miRNA:   3'- agUUGUUAUGCCCgGCCACcGCCGua -5'
19254 3' -56.8 NC_004684.1 + 33815 0.72 0.34448
Target:  5'- uUCGGCGucgGCGGGCggugugcccggCGGcGGCGGCAa -3'
miRNA:   3'- -AGUUGUua-UGCCCG-----------GCCaCCGCCGUa -5'
19254 3' -56.8 NC_004684.1 + 33768 0.67 0.565374
Target:  5'- cUCAGCuacaACGGGaucucggCGGUcGGCGGCAa -3'
miRNA:   3'- -AGUUGuua-UGCCCg------GCCA-CCGCCGUa -5'
19254 3' -56.8 NC_004684.1 + 33502 0.69 0.492156
Target:  5'- gCGGCccuGUacucGCGGG-CGGUGGCGGCu- -3'
miRNA:   3'- aGUUGu--UA----UGCCCgGCCACCGCCGua -5'
19254 3' -56.8 NC_004684.1 + 32741 0.67 0.597678
Target:  5'- aUCGAcCGGUACGucgcGGCCGaccUGGUGGCGUg -3'
miRNA:   3'- -AGUU-GUUAUGC----CCGGCc--ACCGCCGUA- -5'
19254 3' -56.8 NC_004684.1 + 30627 0.72 0.312882
Target:  5'- gUCGGCAc--CGGGCgCGGcccUGGCGGCGUc -3'
miRNA:   3'- -AGUUGUuauGCCCG-GCC---ACCGCCGUA- -5'
19254 3' -56.8 NC_004684.1 + 26586 0.69 0.461127
Target:  5'- gCGGCGGUgugcGCGGGuucgccaCCGGcGGCGGCGUc -3'
miRNA:   3'- aGUUGUUA----UGCCC-------GGCCaCCGCCGUA- -5'
19254 3' -56.8 NC_004684.1 + 25806 0.66 0.641107
Target:  5'- gUCAcCA--ACuGGCCgGGUGGCGGCc- -3'
miRNA:   3'- -AGUuGUuaUGcCCGG-CCACCGCCGua -5'
19254 3' -56.8 NC_004684.1 + 25660 0.67 0.58687
Target:  5'- gCGGCGGUAcCGGGCaGGgcgcgaccuacGGCGGCAa -3'
miRNA:   3'- aGUUGUUAU-GCCCGgCCa----------CCGCCGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.