miRNA display CGI


Results 21 - 40 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19254 3' -56.8 NC_004684.1 + 48951 0.66 0.651968
Target:  5'- aCGGCAcgucgGCGGGCgGgGUGGCcggGGCGg -3'
miRNA:   3'- aGUUGUua---UGCCCGgC-CACCG---CCGUa -5'
19254 3' -56.8 NC_004684.1 + 40579 0.7 0.433061
Target:  5'- cUCggUGAUcucCGGGUCGGUGGUGGuCAg -3'
miRNA:   3'- -AGuuGUUAu--GCCCGGCCACCGCC-GUa -5'
19254 3' -56.8 NC_004684.1 + 18116 0.66 0.641107
Target:  5'- -aAGCAGUACGGcuaccuGCUGcugGGCGGCAa -3'
miRNA:   3'- agUUGUUAUGCC------CGGCca-CCGCCGUa -5'
19254 3' -56.8 NC_004684.1 + 25806 0.66 0.641107
Target:  5'- gUCAcCA--ACuGGCCgGGUGGCGGCc- -3'
miRNA:   3'- -AGUuGUuaUGcCCGG-CCACCGCCGua -5'
19254 3' -56.8 NC_004684.1 + 33884 0.66 0.630238
Target:  5'- -aGGCGGUGCGGG-CGGUGcCGGUg- -3'
miRNA:   3'- agUUGUUAUGCCCgGCCACcGCCGua -5'
19254 3' -56.8 NC_004684.1 + 23760 0.66 0.630238
Target:  5'- --cGCAGUuCGGGCCGuGggGcGCGGCGUu -3'
miRNA:   3'- aguUGUUAuGCCCGGC-Ca-C-CGCCGUA- -5'
19254 3' -56.8 NC_004684.1 + 48393 0.66 0.630238
Target:  5'- aUCAGCAcccCGGcGuuGGUguGGCGGCGa -3'
miRNA:   3'- -AGUUGUuauGCC-CggCCA--CCGCCGUa -5'
19254 3' -56.8 NC_004684.1 + 57130 0.69 0.452312
Target:  5'- gCAGCAcugGCGcGGCUGGUucgccuccauGGCGGCGg -3'
miRNA:   3'- aGUUGUua-UGC-CCGGCCA----------CCGCCGUa -5'
19254 3' -56.8 NC_004684.1 + 43517 0.69 0.472022
Target:  5'- gCGGCAGggGCGGGagCGGUGGCuGCGc -3'
miRNA:   3'- aGUUGUUa-UGCCCg-GCCACCGcCGUa -5'
19254 3' -56.8 NC_004684.1 + 33502 0.69 0.492156
Target:  5'- gCGGCccuGUacucGCGGG-CGGUGGCGGCu- -3'
miRNA:   3'- aGUUGu--UA----UGCCCgGCCACCGCCGua -5'
19254 3' -56.8 NC_004684.1 + 22342 0.69 0.492156
Target:  5'- ---cCGGUACaGG-CGGUGGCGGCGg -3'
miRNA:   3'- aguuGUUAUGcCCgGCCACCGCCGUa -5'
19254 3' -56.8 NC_004684.1 + 57186 0.68 0.512677
Target:  5'- -gGGCGcagGCGGGCCuGGaaGGCGGCGg -3'
miRNA:   3'- agUUGUua-UGCCCGG-CCa-CCGCCGUa -5'
19254 3' -56.8 NC_004684.1 + 11362 0.68 0.523069
Target:  5'- -aGACccgcgaGGuGCCGGUGGUGGCGUc -3'
miRNA:   3'- agUUGuuaug-CC-CGGCCACCGCCGUA- -5'
19254 3' -56.8 NC_004684.1 + 62977 0.68 0.554701
Target:  5'- cUCggUggUGCGcacguGGCCGGUGGcCGGgAa -3'
miRNA:   3'- -AGuuGuuAUGC-----CCGGCCACC-GCCgUa -5'
19254 3' -56.8 NC_004684.1 + 25660 0.67 0.58687
Target:  5'- gCGGCGGUAcCGGGCaGGgcgcgaccuacGGCGGCAa -3'
miRNA:   3'- aGUUGUUAU-GCCCGgCCa----------CCGCCGUa -5'
19254 3' -56.8 NC_004684.1 + 40366 0.67 0.58687
Target:  5'- cUUGGCcuUGgGGGCCucggcGGUGGCGGCc- -3'
miRNA:   3'- -AGUUGuuAUgCCCGG-----CCACCGCCGua -5'
19254 3' -56.8 NC_004684.1 + 32741 0.67 0.597678
Target:  5'- aUCGAcCGGUACGucgcGGCCGaccUGGUGGCGUg -3'
miRNA:   3'- -AGUU-GUUAUGC----CCGGCc--ACCGCCGUA- -5'
19254 3' -56.8 NC_004684.1 + 49219 0.67 0.608515
Target:  5'- gUCGGuCGGUGcCGGGCCGGgcguCGGCAc -3'
miRNA:   3'- -AGUU-GUUAU-GCCCGGCCacc-GCCGUa -5'
19254 3' -56.8 NC_004684.1 + 3041 0.66 0.630238
Target:  5'- --cGCAcaACGaGGCCcgGGUGGUGGCGc -3'
miRNA:   3'- aguUGUuaUGC-CCGG--CCACCGCCGUa -5'
19254 3' -56.8 NC_004684.1 + 43448 0.66 0.630238
Target:  5'- gUCggUGcgGCGGGCgCGGcagcaggugcGGCGGCAg -3'
miRNA:   3'- -AGuuGUuaUGCCCG-GCCa---------CCGCCGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.