miRNA display CGI


Results 21 - 40 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19254 3' -56.8 NC_004684.1 + 67193 0.67 0.597678
Target:  5'- cUCAGCGuUGCcaGGGCCaccuuGGUGGUGGUc- -3'
miRNA:   3'- -AGUUGUuAUG--CCCGG-----CCACCGCCGua -5'
19254 3' -56.8 NC_004684.1 + 32741 0.67 0.597678
Target:  5'- aUCGAcCGGUACGucgcGGCCGaccUGGUGGCGUg -3'
miRNA:   3'- -AGUU-GUUAUGC----CCGGCc--ACCGCCGUA- -5'
19254 3' -56.8 NC_004684.1 + 40366 0.67 0.58687
Target:  5'- cUUGGCcuUGgGGGCCucggcGGUGGCGGCc- -3'
miRNA:   3'- -AGUUGuuAUgCCCGG-----CCACCGCCGua -5'
19254 3' -56.8 NC_004684.1 + 25660 0.67 0.58687
Target:  5'- gCGGCGGUAcCGGGCaGGgcgcgaccuacGGCGGCAa -3'
miRNA:   3'- aGUUGUUAU-GCCCGgCCa----------CCGCCGUa -5'
19254 3' -56.8 NC_004684.1 + 11853 0.67 0.58687
Target:  5'- uUCGGCA--ACGGGUacgaacucGUGGCGGCGc -3'
miRNA:   3'- -AGUUGUuaUGCCCGgc------CACCGCCGUa -5'
19254 3' -56.8 NC_004684.1 + 7530 0.67 0.58687
Target:  5'- cCGGCAccgACcuGGCCGccGUGGCGGCGUu -3'
miRNA:   3'- aGUUGUua-UGc-CCGGC--CACCGCCGUA- -5'
19254 3' -56.8 NC_004684.1 + 14932 0.67 0.565374
Target:  5'- gCGGCcAUGCcgucGGGCauccCGGUGGCGGCc- -3'
miRNA:   3'- aGUUGuUAUG----CCCG----GCCACCGCCGua -5'
19254 3' -56.8 NC_004684.1 + 7573 0.67 0.565374
Target:  5'- -uGGCGcugGUGC-GGCUGGUGcGCGGCAa -3'
miRNA:   3'- agUUGU---UAUGcCCGGCCAC-CGCCGUa -5'
19254 3' -56.8 NC_004684.1 + 64482 0.67 0.565374
Target:  5'- -------aGCaGGCCGGUGGUGGCc- -3'
miRNA:   3'- aguuguuaUGcCCGGCCACCGCCGua -5'
19254 3' -56.8 NC_004684.1 + 33768 0.67 0.565374
Target:  5'- cUCAGCuacaACGGGaucucggCGGUcGGCGGCAa -3'
miRNA:   3'- -AGUUGuua-UGCCCg------GCCA-CCGCCGUa -5'
19254 3' -56.8 NC_004684.1 + 62977 0.68 0.554701
Target:  5'- cUCggUggUGCGcacguGGCCGGUGGcCGGgAa -3'
miRNA:   3'- -AGuuGuuAUGC-----CCGGCCACC-GCCgUa -5'
19254 3' -56.8 NC_004684.1 + 39306 0.68 0.544088
Target:  5'- ---cCGGUGCGGGUCGcGcGGCGGCc- -3'
miRNA:   3'- aguuGUUAUGCCCGGC-CaCCGCCGua -5'
19254 3' -56.8 NC_004684.1 + 65100 0.68 0.523069
Target:  5'- gUCAGCAccGCGucguGGCCcaGGcUGGCGGCAa -3'
miRNA:   3'- -AGUUGUuaUGC----CCGG--CC-ACCGCCGUa -5'
19254 3' -56.8 NC_004684.1 + 11362 0.68 0.523069
Target:  5'- -aGACccgcgaGGuGCCGGUGGUGGCGUc -3'
miRNA:   3'- agUUGuuaug-CC-CGGCCACCGCCGUA- -5'
19254 3' -56.8 NC_004684.1 + 18284 0.68 0.516824
Target:  5'- cCGACGccgACGGcgaccuguggcaccuGCCGGuUGGCGGCGa -3'
miRNA:   3'- aGUUGUua-UGCC---------------CGGCC-ACCGCCGUa -5'
19254 3' -56.8 NC_004684.1 + 57186 0.68 0.512677
Target:  5'- -gGGCGcagGCGGGCCuGGaaGGCGGCGg -3'
miRNA:   3'- agUUGUua-UGCCCGG-CCa-CCGCCGUa -5'
19254 3' -56.8 NC_004684.1 + 33502 0.69 0.492156
Target:  5'- gCGGCccuGUacucGCGGG-CGGUGGCGGCu- -3'
miRNA:   3'- aGUUGu--UA----UGCCCgGCCACCGCCGua -5'
19254 3' -56.8 NC_004684.1 + 22342 0.69 0.492156
Target:  5'- ---cCGGUACaGG-CGGUGGCGGCGg -3'
miRNA:   3'- aguuGUUAUGcCCgGCCACCGCCGUa -5'
19254 3' -56.8 NC_004684.1 + 35650 0.69 0.482038
Target:  5'- cCGAC-GUACaGGGCCGucGGCGGCGg -3'
miRNA:   3'- aGUUGuUAUG-CCCGGCcaCCGCCGUa -5'
19254 3' -56.8 NC_004684.1 + 43517 0.69 0.472022
Target:  5'- gCGGCAGggGCGGGagCGGUGGCuGCGc -3'
miRNA:   3'- aGUUGUUa-UGCCCg-GCCACCGcCGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.