miRNA display CGI


Results 61 - 80 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19254 5' -61.6 NC_004684.1 + 2082 0.67 0.382559
Target:  5'- -cGCGCCaGCUcgcaACUGGUggcgcagcacuaCGGCGCGGCg -3'
miRNA:   3'- guUGCGG-CGG----UGGCCA------------GCUGCGCCGa -5'
19254 5' -61.6 NC_004684.1 + 4903 0.67 0.391004
Target:  5'- ---gGUCGCCACCGGccUCG--GCGGCa -3'
miRNA:   3'- guugCGGCGGUGGCC--AGCugCGCCGa -5'
19254 5' -61.6 NC_004684.1 + 59118 0.67 0.391004
Target:  5'- gUAGCGCCGCa---GGUCGcggcgcACGUGGCg -3'
miRNA:   3'- -GUUGCGGCGguggCCAGC------UGCGCCGa -5'
19254 5' -61.6 NC_004684.1 + 57239 0.67 0.391004
Target:  5'- aAACGCC-CCACCuGGgCGG-GCGGCa -3'
miRNA:   3'- gUUGCGGcGGUGG-CCaGCUgCGCCGa -5'
19254 5' -61.6 NC_004684.1 + 20068 0.67 0.382559
Target:  5'- uCGACGCC-CaCACCGG-CGACaCGGUg -3'
miRNA:   3'- -GUUGCGGcG-GUGGCCaGCUGcGCCGa -5'
19254 5' -61.6 NC_004684.1 + 59997 0.67 0.39957
Target:  5'- -cGCGCCGCagUAUUGGaCGGCGCaGGCg -3'
miRNA:   3'- guUGCGGCG--GUGGCCaGCUGCG-CCGa -5'
19254 5' -61.6 NC_004684.1 + 39827 0.67 0.39957
Target:  5'- -cGCGaaaCGCCACCGGgccuccuagUCGAUuagcuccagcagGCGGCUg -3'
miRNA:   3'- guUGCg--GCGGUGGCC---------AGCUG------------CGCCGA- -5'
19254 5' -61.6 NC_004684.1 + 22731 0.67 0.408254
Target:  5'- -cGCGCCGCCGCagcagCGGgUGACGCagugGGCc -3'
miRNA:   3'- guUGCGGCGGUG-----GCCaGCUGCG----CCGa -5'
19254 5' -61.6 NC_004684.1 + 62486 0.67 0.408254
Target:  5'- aUggUGCCGCCgagGCCGGU-GGCGaccaGGCc -3'
miRNA:   3'- -GuuGCGGCGG---UGGCCAgCUGCg---CCGa -5'
19254 5' -61.6 NC_004684.1 + 26613 0.67 0.425973
Target:  5'- gCGGCGgCGUCAUCGccaacgacaccGUCGGCGCGGa- -3'
miRNA:   3'- -GUUGCgGCGGUGGC-----------CAGCUGCGCCga -5'
19254 5' -61.6 NC_004684.1 + 2469 0.67 0.425973
Target:  5'- uCAcCGCCGCCACCugGGUCGcCGCc--- -3'
miRNA:   3'- -GUuGCGGCGGUGG--CCAGCuGCGccga -5'
19254 5' -61.6 NC_004684.1 + 42415 0.67 0.425076
Target:  5'- gGAUGCCGCCcugggacACCGGaagCGugGCcgggucGGCa -3'
miRNA:   3'- gUUGCGGCGG-------UGGCCa--GCugCG------CCGa -5'
19254 5' -61.6 NC_004684.1 + 48054 0.67 0.391004
Target:  5'- uCAGCGCCucCCGCuCGGccaCGGCGgCGGCg -3'
miRNA:   3'- -GUUGCGGc-GGUG-GCCa--GCUGC-GCCGa -5'
19254 5' -61.6 NC_004684.1 + 66647 0.67 0.425973
Target:  5'- gAGCGCCGCCAgggcgUCGGugUCGuCGgGGUa -3'
miRNA:   3'- gUUGCGGCGGU-----GGCC--AGCuGCgCCGa -5'
19254 5' -61.6 NC_004684.1 + 43415 0.67 0.425973
Target:  5'- --cCGCCGCCgaacccgagGCCcggcgaggccgaGGUCGGUGCGGCg -3'
miRNA:   3'- guuGCGGCGG---------UGG------------CCAGCUGCGCCGa -5'
19254 5' -61.6 NC_004684.1 + 4291 0.67 0.417056
Target:  5'- cUggUGCUGCCACaCGaGUgGgACGCGGUg -3'
miRNA:   3'- -GuuGCGGCGGUG-GC-CAgC-UGCGCCGa -5'
19254 5' -61.6 NC_004684.1 + 37935 0.67 0.408255
Target:  5'- -cAUGCaCGCC-CUGcUCGACGCGGUg -3'
miRNA:   3'- guUGCG-GCGGuGGCcAGCUGCGCCGa -5'
19254 5' -61.6 NC_004684.1 + 26426 0.67 0.408255
Target:  5'- nCAGCGggguUCGCCGCCGGU-GGCccgguguacgGCGGCa -3'
miRNA:   3'- -GUUGC----GGCGGUGGCCAgCUG----------CGCCGa -5'
19254 5' -61.6 NC_004684.1 + 18671 0.67 0.408255
Target:  5'- --gUGCCGCCGCUGGgCG-CGaCGGUa -3'
miRNA:   3'- guuGCGGCGGUGGCCaGCuGC-GCCGa -5'
19254 5' -61.6 NC_004684.1 + 42986 0.67 0.408255
Target:  5'- aCAACGCCcCCACCucacuGGagGugGgGGCg -3'
miRNA:   3'- -GUUGCGGcGGUGG-----CCagCugCgCCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.