miRNA display CGI


Results 81 - 100 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19254 5' -61.6 NC_004684.1 + 39827 0.67 0.39957
Target:  5'- -cGCGaaaCGCCACCGGgccuccuagUCGAUuagcuccagcagGCGGCUg -3'
miRNA:   3'- guUGCg--GCGGUGGCC---------AGCUG------------CGCCGA- -5'
19254 5' -61.6 NC_004684.1 + 59288 0.67 0.382559
Target:  5'- uCAAUGCUGCCggugggcagGCCGGUgucggggucgaUGGCGCuGGCa -3'
miRNA:   3'- -GUUGCGGCGG---------UGGCCA-----------GCUGCG-CCGa -5'
19254 5' -61.6 NC_004684.1 + 66647 0.67 0.425973
Target:  5'- gAGCGCCGCCAgggcgUCGGugUCGuCGgGGUa -3'
miRNA:   3'- gUUGCGGCGGU-----GGCC--AGCuGCgCCGa -5'
19254 5' -61.6 NC_004684.1 + 54111 0.67 0.391004
Target:  5'- -cGCGCaccaGCCACCGG-CGGCcaccaGCGcGCUg -3'
miRNA:   3'- guUGCGg---CGGUGGCCaGCUG-----CGC-CGA- -5'
19254 5' -61.6 NC_004684.1 + 22960 0.67 0.397847
Target:  5'- uCGACuaCGCCACCGGgccggacgccaaCGAgGUGGCc -3'
miRNA:   3'- -GUUGcgGCGGUGGCCa-----------GCUgCGCCGa -5'
19254 5' -61.6 NC_004684.1 + 62486 0.67 0.408254
Target:  5'- aUggUGCCGCCgagGCCGGU-GGCGaccaGGCc -3'
miRNA:   3'- -GuuGCGGCGG---UGGCCAgCUGCg---CCGa -5'
19254 5' -61.6 NC_004684.1 + 22731 0.67 0.408254
Target:  5'- -cGCGCCGCCGCagcagCGGgUGACGCagugGGCc -3'
miRNA:   3'- guUGCGGCGGUG-----GCCaGCUGCG----CCGa -5'
19254 5' -61.6 NC_004684.1 + 42415 0.67 0.425076
Target:  5'- gGAUGCCGCCcugggacACCGGaagCGugGCcgggucGGCa -3'
miRNA:   3'- gUUGCGGCGG-------UGGCCa--GCugCG------CCGa -5'
19254 5' -61.6 NC_004684.1 + 4164 0.67 0.382559
Target:  5'- cCGACGCCcggcaacgaGCCGCCGGUggccgagaaGAUGgGGCc -3'
miRNA:   3'- -GUUGCGG---------CGGUGGCCAg--------CUGCgCCGa -5'
19254 5' -61.6 NC_004684.1 + 15814 0.67 0.382559
Target:  5'- -cACGCCGagcgaC-CCGGUgGcGCGCGGCa -3'
miRNA:   3'- guUGCGGCg----GuGGCCAgC-UGCGCCGa -5'
19254 5' -61.6 NC_004684.1 + 30406 0.68 0.342191
Target:  5'- cCGGCGCUGCCguggcaacACCuGuUCGACGgCGGCg -3'
miRNA:   3'- -GUUGCGGCGG--------UGGcC-AGCUGC-GCCGa -5'
19254 5' -61.6 NC_004684.1 + 10631 0.68 0.332212
Target:  5'- uCGGCGUCGUCACCaccguggucuGGUgccgguucccgugcUGGCGCGGCa -3'
miRNA:   3'- -GUUGCGGCGGUGG----------CCA--------------GCUGCGCCGa -5'
19254 5' -61.6 NC_004684.1 + 67230 0.68 0.326927
Target:  5'- cCAAC-CCgGUCACCGGuUCGAC-CGGCg -3'
miRNA:   3'- -GUUGcGG-CGGUGGCC-AGCUGcGCCGa -5'
19254 5' -61.6 NC_004684.1 + 12869 0.68 0.326927
Target:  5'- aCGGCGCuCGuacccCCGCCGGUgaGCGCGGUa -3'
miRNA:   3'- -GUUGCG-GC-----GGUGGCCAgcUGCGCCGa -5'
19254 5' -61.6 NC_004684.1 + 23208 0.68 0.334496
Target:  5'- cCAAgGCCGCCGgUGG-CGACgGCGGg- -3'
miRNA:   3'- -GUUgCGGCGGUgGCCaGCUG-CGCCga -5'
19254 5' -61.6 NC_004684.1 + 38480 0.68 0.326927
Target:  5'- -cACGUCGU--CCGGUCGAUcaGCGGCg -3'
miRNA:   3'- guUGCGGCGguGGCCAGCUG--CGCCGa -5'
19254 5' -61.6 NC_004684.1 + 57942 0.68 0.334496
Target:  5'- --cCGaCCGCCugCGGugcUCGcUGCGGCUg -3'
miRNA:   3'- guuGC-GGCGGugGCC---AGCuGCGCCGA- -5'
19254 5' -61.6 NC_004684.1 + 18246 0.68 0.350014
Target:  5'- aCAACGUgGCCGCCa-UCGACGgcaaCGGCa -3'
miRNA:   3'- -GUUGCGgCGGUGGccAGCUGC----GCCGa -5'
19254 5' -61.6 NC_004684.1 + 65801 0.68 0.342191
Target:  5'- cCGAUGCCGUgCACCGGgcaggUGACccggaggcaccgGCGGCUc -3'
miRNA:   3'- -GUUGCGGCG-GUGGCCa----GCUG------------CGCCGA- -5'
19254 5' -61.6 NC_004684.1 + 52734 0.68 0.342191
Target:  5'- aGGCGCUGuCCuCCaGGUCGuCGUGGCc -3'
miRNA:   3'- gUUGCGGC-GGuGG-CCAGCuGCGCCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.