Results 61 - 80 of 226 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
19254 | 5' | -61.6 | NC_004684.1 | + | 60622 | 0.7 | 0.277522 |
Target: 5'- cCGGCGCaCGUCGCCcaugcgcagGGUCGAgGgGGCa -3' miRNA: 3'- -GUUGCG-GCGGUGG---------CCAGCUgCgCCGa -5' |
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19254 | 5' | -61.6 | NC_004684.1 | + | 6328 | 0.7 | 0.277522 |
Target: 5'- aCAAUGCCGCCACCGGcccguauugUUGAaccuguaCGGCg -3' miRNA: 3'- -GUUGCGGCGGUGGCC---------AGCUgc-----GCCGa -5' |
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19254 | 5' | -61.6 | NC_004684.1 | + | 3796 | 0.7 | 0.264544 |
Target: 5'- uGACGCCGCCGCCuuggcGGUCaaggaucugcugGGCGCguucGGCg -3' miRNA: 3'- gUUGCGGCGGUGG-----CCAG------------CUGCG----CCGa -5' |
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19254 | 5' | -61.6 | NC_004684.1 | + | 25626 | 0.7 | 0.264544 |
Target: 5'- gCGACGCUGCCcaacgguguGCCGuUCGAgaGCGGCg -3' miRNA: 3'- -GUUGCGGCGG---------UGGCcAGCUg-CGCCGa -5' |
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19254 | 5' | -61.6 | NC_004684.1 | + | 52451 | 0.7 | 0.258242 |
Target: 5'- ---gGCCGCCACCGGgaugccCGACGgcaUGGCc -3' miRNA: 3'- guugCGGCGGUGGCCa-----GCUGC---GCCGa -5' |
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19254 | 5' | -61.6 | NC_004684.1 | + | 47677 | 0.69 | 0.284199 |
Target: 5'- uCAGCGCCuucuuGUCgaaggugauGCUGGUUGGCGCGGUUg -3' miRNA: 3'- -GUUGCGG-----CGG---------UGGCCAGCUGCGCCGA- -5' |
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19254 | 5' | -61.6 | NC_004684.1 | + | 17518 | 0.69 | 0.284199 |
Target: 5'- gAGCGCggUGCCacGCCGGaCGACGUGGUc -3' miRNA: 3'- gUUGCG--GCGG--UGGCCaGCUGCGCCGa -5' |
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19254 | 5' | -61.6 | NC_004684.1 | + | 61537 | 0.69 | 0.284199 |
Target: 5'- aGGCGCUggcguGCCGCUGGUUGGuccgggUGCGGCa -3' miRNA: 3'- gUUGCGG-----CGGUGGCCAGCU------GCGCCGa -5' |
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19254 | 5' | -61.6 | NC_004684.1 | + | 26308 | 0.69 | 0.289631 |
Target: 5'- gCAGCucgGCCagGCCGCCGGgccgccgauugcCGACGCGGUg -3' miRNA: 3'- -GUUG---CGG--CGGUGGCCa-----------GCUGCGCCGa -5' |
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19254 | 5' | -61.6 | NC_004684.1 | + | 63173 | 0.69 | 0.297932 |
Target: 5'- ---gGuuGCgCGCCGGgucgacUCGACGCGGCc -3' miRNA: 3'- guugCggCG-GUGGCC------AGCUGCGCCGa -5' |
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19254 | 5' | -61.6 | NC_004684.1 | + | 61310 | 0.69 | 0.30074 |
Target: 5'- gCAGCaCCGCCGCCGGgccgccgcccucggCGGCGUagguGGCg -3' miRNA: 3'- -GUUGcGGCGGUGGCCa-------------GCUGCG----CCGa -5' |
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19254 | 5' | -61.6 | NC_004684.1 | + | 42137 | 0.69 | 0.302151 |
Target: 5'- uCAACGCCgacGCCACCacgcacggccuaugGGUCGagagcgccgcacuGCGCGGUg -3' miRNA: 3'- -GUUGCGG---CGGUGG--------------CCAGC-------------UGCGCCGa -5' |
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19254 | 5' | -61.6 | NC_004684.1 | + | 24906 | 0.69 | 0.30499 |
Target: 5'- gAugGCCGCCGCCG--CGAUcagcgcgcuggGCGGCg -3' miRNA: 3'- gUugCGGCGGUGGCcaGCUG-----------CGCCGa -5' |
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19254 | 5' | -61.6 | NC_004684.1 | + | 32637 | 0.69 | 0.30499 |
Target: 5'- aCGACaCCGCCgagaucguGCCGGUUGGCaaggccugGCGGCg -3' miRNA: 3'- -GUUGcGGCGG--------UGGCCAGCUG--------CGCCGa -5' |
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19254 | 5' | -61.6 | NC_004684.1 | + | 41441 | 0.69 | 0.30499 |
Target: 5'- gCGGCGgUGCCGCCGGUgucaGugG-GGCUg -3' miRNA: 3'- -GUUGCgGCGGUGGCCAg---CugCgCCGA- -5' |
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19254 | 5' | -61.6 | NC_004684.1 | + | 59854 | 0.69 | 0.30499 |
Target: 5'- gAACGCCGCCACggcggccaGGUCGGucCG-GGCa -3' miRNA: 3'- gUUGCGGCGGUGg-------CCAGCU--GCgCCGa -5' |
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19254 | 5' | -61.6 | NC_004684.1 | + | 12877 | 0.69 | 0.312175 |
Target: 5'- cCGAgGCCGCCGCCGGggagccugcgcUCGccgccaGCGGUg -3' miRNA: 3'- -GUUgCGGCGGUGGCC-----------AGCug----CGCCGa -5' |
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19254 | 5' | -61.6 | NC_004684.1 | + | 46970 | 0.69 | 0.319487 |
Target: 5'- gCAGCgGCUGCCACCaGUaccCGAUGCGGa- -3' miRNA: 3'- -GUUG-CGGCGGUGGcCA---GCUGCGCCga -5' |
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19254 | 5' | -61.6 | NC_004684.1 | + | 140 | 0.69 | 0.290316 |
Target: 5'- gCGACGCCaGCCcggaaacGCCGGUCGAacCGGUg -3' miRNA: 3'- -GUUGCGG-CGG-------UGGCCAGCUgcGCCGa -5' |
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19254 | 5' | -61.6 | NC_004684.1 | + | 30655 | 0.69 | 0.284199 |
Target: 5'- uCAGCGCCGggaCgGCgaacaGGUCGAUGCGGUa -3' miRNA: 3'- -GUUGCGGC---GgUGg----CCAGCUGCGCCGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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