miRNA display CGI


Results 41 - 60 of 226 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19254 5' -61.6 NC_004684.1 + 35827 0.71 0.217518
Target:  5'- aCGACGCCGCCAgCu-UCGACGUaGGCa -3'
miRNA:   3'- -GUUGCGGCGGUgGccAGCUGCG-CCGa -5'
19254 5' -61.6 NC_004684.1 + 63565 0.71 0.227996
Target:  5'- --cCGCUGCCAUCaGGUccaucggccugcgCGGCGCGGCg -3'
miRNA:   3'- guuGCGGCGGUGG-CCA-------------GCUGCGCCGa -5'
19254 5' -61.6 NC_004684.1 + 65873 0.71 0.228559
Target:  5'- -cGCGUCGUCGCC-GUUGAgCGCGGCg -3'
miRNA:   3'- guUGCGGCGGUGGcCAGCU-GCGCCGa -5'
19254 5' -61.6 NC_004684.1 + 57366 0.71 0.234256
Target:  5'- uGAUG-CGCUcCCGGUCGgcGCGCGGCa -3'
miRNA:   3'- gUUGCgGCGGuGGCCAGC--UGCGCCGa -5'
19254 5' -61.6 NC_004684.1 + 48725 0.71 0.234256
Target:  5'- cCAGCGCuUGCCGgUGG-CGAUGUGGCa -3'
miRNA:   3'- -GUUGCG-GCGGUgGCCaGCUGCGCCGa -5'
19254 5' -61.6 NC_004684.1 + 11425 0.71 0.240071
Target:  5'- aGACGCCGaugacCCGCUGGagcgCGGCGuCGGCg -3'
miRNA:   3'- gUUGCGGC-----GGUGGCCa---GCUGC-GCCGa -5'
19254 5' -61.6 NC_004684.1 + 39612 0.71 0.240072
Target:  5'- gCAGCGCUcCCACUccuggcgggGGUCG-CGCGGCa -3'
miRNA:   3'- -GUUGCGGcGGUGG---------CCAGCuGCGCCGa -5'
19254 5' -61.6 NC_004684.1 + 1396 0.71 0.240072
Target:  5'- gGGCgGCgGCUACCGGUaCGG-GCGGCUg -3'
miRNA:   3'- gUUG-CGgCGGUGGCCA-GCUgCGCCGA- -5'
19254 5' -61.6 NC_004684.1 + 54414 0.7 0.246007
Target:  5'- cCGGCGCUcgguguugccuGCCGCCGcGUCGGCGgGaGCa -3'
miRNA:   3'- -GUUGCGG-----------CGGUGGC-CAGCUGCgC-CGa -5'
19254 5' -61.6 NC_004684.1 + 26230 0.7 0.246007
Target:  5'- -cACcCCGCgCGCgGGUcCGGCGCGGCg -3'
miRNA:   3'- guUGcGGCG-GUGgCCA-GCUGCGCCGa -5'
19254 5' -61.6 NC_004684.1 + 1118 0.7 0.252063
Target:  5'- aCGugGCCGuCCGCUGGgaCGACGCcGCg -3'
miRNA:   3'- -GUugCGGC-GGUGGCCa-GCUGCGcCGa -5'
19254 5' -61.6 NC_004684.1 + 56152 0.7 0.258242
Target:  5'- gAGCGUgGCC-CUGGcCGACGaCGGCg -3'
miRNA:   3'- gUUGCGgCGGuGGCCaGCUGC-GCCGa -5'
19254 5' -61.6 NC_004684.1 + 25018 0.7 0.258242
Target:  5'- uCAGCGCCGgUgcaGCUGGaggcggcaUCGACGUGGCg -3'
miRNA:   3'- -GUUGCGGCgG---UGGCC--------AGCUGCGCCGa -5'
19254 5' -61.6 NC_004684.1 + 52451 0.7 0.258242
Target:  5'- ---gGCCGCCACCGGgaugccCGACGgcaUGGCc -3'
miRNA:   3'- guugCGGCGGUGGCCa-----GCUGC---GCCGa -5'
19254 5' -61.6 NC_004684.1 + 46718 0.7 0.263909
Target:  5'- gAGCG-CGCCACCGacauuacGUUGAgGCGGCg -3'
miRNA:   3'- gUUGCgGCGGUGGC-------CAGCUgCGCCGa -5'
19254 5' -61.6 NC_004684.1 + 25626 0.7 0.264544
Target:  5'- gCGACGCUGCCcaacgguguGCCGuUCGAgaGCGGCg -3'
miRNA:   3'- -GUUGCGGCGG---------UGGCcAGCUg-CGCCGa -5'
19254 5' -61.6 NC_004684.1 + 3796 0.7 0.264544
Target:  5'- uGACGCCGCCGCCuuggcGGUCaaggaucugcugGGCGCguucGGCg -3'
miRNA:   3'- gUUGCGGCGGUGG-----CCAG------------CUGCG----CCGa -5'
19254 5' -61.6 NC_004684.1 + 56613 0.7 0.264544
Target:  5'- cCGACGCCGUCGCgGGU-GuCGCgGGCa -3'
miRNA:   3'- -GUUGCGGCGGUGgCCAgCuGCG-CCGa -5'
19254 5' -61.6 NC_004684.1 + 20471 0.7 0.264544
Target:  5'- aCAcCGCCGuUgGCCGGUCcuggggGAUGCGGCg -3'
miRNA:   3'- -GUuGCGGC-GgUGGCCAG------CUGCGCCGa -5'
19254 5' -61.6 NC_004684.1 + 9864 0.7 0.270971
Target:  5'- ---aGCUGCCGCCGGauccCGACGCcGCg -3'
miRNA:   3'- guugCGGCGGUGGCCa---GCUGCGcCGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.