miRNA display CGI


Results 81 - 100 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19254 5' -61.6 NC_004684.1 + 25817 0.69 0.304989
Target:  5'- aAAUGCCGCCGCCGaagcaagguGUCGcACcCGGCc -3'
miRNA:   3'- gUUGCGGCGGUGGC---------CAGC-UGcGCCGa -5'
19254 5' -61.6 NC_004684.1 + 34654 0.69 0.304989
Target:  5'- ---gGCCGCgacgUACCGGUCGAUGUaGGCc -3'
miRNA:   3'- guugCGGCG----GUGGCCAGCUGCG-CCGa -5'
19254 5' -61.6 NC_004684.1 + 322 0.69 0.304989
Target:  5'- cCAACGCC-CgCACCGGguaCGGCGCGaaGCg -3'
miRNA:   3'- -GUUGCGGcG-GUGGCCa--GCUGCGC--CGa -5'
19254 5' -61.6 NC_004684.1 + 48685 0.69 0.304989
Target:  5'- gAGCG-UGCCACCGGUcagCGACuGCuGGCUg -3'
miRNA:   3'- gUUGCgGCGGUGGCCA---GCUG-CG-CCGA- -5'
19254 5' -61.6 NC_004684.1 + 59854 0.69 0.30499
Target:  5'- gAACGCCGCCACggcggccaGGUCGGucCG-GGCa -3'
miRNA:   3'- gUUGCGGCGGUGg-------CCAGCU--GCgCCGa -5'
19254 5' -61.6 NC_004684.1 + 41441 0.69 0.30499
Target:  5'- gCGGCGgUGCCGCCGGUgucaGugG-GGCUg -3'
miRNA:   3'- -GUUGCgGCGGUGGCCAg---CugCgCCGA- -5'
19254 5' -61.6 NC_004684.1 + 32637 0.69 0.30499
Target:  5'- aCGACaCCGCCgagaucguGCCGGUUGGCaaggccugGCGGCg -3'
miRNA:   3'- -GUUGcGGCGG--------UGGCCAGCUG--------CGCCGa -5'
19254 5' -61.6 NC_004684.1 + 24906 0.69 0.30499
Target:  5'- gAugGCCGCCGCCG--CGAUcagcgcgcuggGCGGCg -3'
miRNA:   3'- gUugCGGCGGUGGCcaGCUG-----------CGCCGa -5'
19254 5' -61.6 NC_004684.1 + 12877 0.69 0.312175
Target:  5'- cCGAgGCCGCCGCCGGggagccugcgcUCGccgccaGCGGUg -3'
miRNA:   3'- -GUUgCGGCGGUGGCC-----------AGCug----CGCCGa -5'
19254 5' -61.6 NC_004684.1 + 6481 0.69 0.319487
Target:  5'- gCGACGCCGUgGCCgagauGGUCGAUGaacuggaGGCc -3'
miRNA:   3'- -GUUGCGGCGgUGG-----CCAGCUGCg------CCGa -5'
19254 5' -61.6 NC_004684.1 + 55565 0.69 0.319487
Target:  5'- -cGCGCCaGUCGCCGGacagCGGCGCGcucGCg -3'
miRNA:   3'- guUGCGG-CGGUGGCCa---GCUGCGC---CGa -5'
19254 5' -61.6 NC_004684.1 + 46970 0.69 0.319487
Target:  5'- gCAGCgGCUGCCACCaGUaccCGAUGCGGa- -3'
miRNA:   3'- -GUUG-CGGCGGUGGcCA---GCUGCGCCga -5'
19254 5' -61.6 NC_004684.1 + 9049 0.69 0.319487
Target:  5'- gCAACGCCagcaggGCCACCGGgcgcgccaUGACcCGGCg -3'
miRNA:   3'- -GUUGCGG------CGGUGGCCa-------GCUGcGCCGa -5'
19254 5' -61.6 NC_004684.1 + 13034 0.68 0.324682
Target:  5'- -uACGUCGCCggGCCGGUCGgcuuccgcgagaucGCGCugGGCa -3'
miRNA:   3'- guUGCGGCGG--UGGCCAGC--------------UGCG--CCGa -5'
19254 5' -61.6 NC_004684.1 + 47183 0.68 0.326178
Target:  5'- cCAGgGCCGCCGCUGcG-CGGCgaacgguGCGGCg -3'
miRNA:   3'- -GUUgCGGCGGUGGC-CaGCUG-------CGCCGa -5'
19254 5' -61.6 NC_004684.1 + 51715 0.68 0.326178
Target:  5'- cCggUGCCGCCuuCCaGGUCGuacugggccaggaAUGCGGCg -3'
miRNA:   3'- -GuuGCGGCGGu-GG-CCAGC-------------UGCGCCGa -5'
19254 5' -61.6 NC_004684.1 + 67230 0.68 0.326927
Target:  5'- cCAAC-CCgGUCACCGGuUCGAC-CGGCg -3'
miRNA:   3'- -GUUGcGG-CGGUGGCC-AGCUGcGCCGa -5'
19254 5' -61.6 NC_004684.1 + 12869 0.68 0.326927
Target:  5'- aCGGCGCuCGuacccCCGCCGGUgaGCGCGGUa -3'
miRNA:   3'- -GUUGCG-GC-----GGUGGCCAgcUGCGCCGa -5'
19254 5' -61.6 NC_004684.1 + 38480 0.68 0.326927
Target:  5'- -cACGUCGU--CCGGUCGAUcaGCGGCg -3'
miRNA:   3'- guUGCGGCGguGGCCAGCUG--CGCCGa -5'
19254 5' -61.6 NC_004684.1 + 19327 0.68 0.326928
Target:  5'- -uACGCCGCCGCCguGGcCGA-GCGGg- -3'
miRNA:   3'- guUGCGGCGGUGG--CCaGCUgCGCCga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.