miRNA display CGI


Results 61 - 80 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19254 5' -61.6 NC_004684.1 + 37935 0.67 0.408255
Target:  5'- -cAUGCaCGCC-CUGcUCGACGCGGUg -3'
miRNA:   3'- guUGCG-GCGGuGGCcAGCUGCGCCGa -5'
19254 5' -61.6 NC_004684.1 + 18671 0.67 0.408255
Target:  5'- --gUGCCGCCGCUGGgCG-CGaCGGUa -3'
miRNA:   3'- guuGCGGCGGUGGCCaGCuGC-GCCGa -5'
19254 5' -61.6 NC_004684.1 + 42986 0.67 0.408255
Target:  5'- aCAACGCCcCCACCucacuGGagGugGgGGCg -3'
miRNA:   3'- -GUUGCGGcGGUGG-----CCagCugCgCCGa -5'
19254 5' -61.6 NC_004684.1 + 22731 0.67 0.408254
Target:  5'- -cGCGCCGCCGCagcagCGGgUGACGCagugGGCc -3'
miRNA:   3'- guUGCGGCGGUG-----GCCaGCUGCG----CCGa -5'
19254 5' -61.6 NC_004684.1 + 62486 0.67 0.408254
Target:  5'- aUggUGCCGCCgagGCCGGU-GGCGaccaGGCc -3'
miRNA:   3'- -GuuGCGGCGG---UGGCCAgCUGCg---CCGa -5'
19254 5' -61.6 NC_004684.1 + 7937 0.67 0.39957
Target:  5'- aCAuCGCCGCCgaccggcgcacACCGGUgGGCaaggccgccagGCGGCc -3'
miRNA:   3'- -GUuGCGGCGG-----------UGGCCAgCUG-----------CGCCGa -5'
19254 5' -61.6 NC_004684.1 + 59997 0.67 0.39957
Target:  5'- -cGCGCCGCagUAUUGGaCGGCGCaGGCg -3'
miRNA:   3'- guUGCGGCG--GUGGCCaGCUGCG-CCGa -5'
19254 5' -61.6 NC_004684.1 + 36221 0.67 0.39957
Target:  5'- gCAGCGUgGCCACCGccgagaccgcUGGCGUGGCc -3'
miRNA:   3'- -GUUGCGgCGGUGGCca--------GCUGCGCCGa -5'
19254 5' -61.6 NC_004684.1 + 39827 0.67 0.39957
Target:  5'- -cGCGaaaCGCCACCGGgccuccuagUCGAUuagcuccagcagGCGGCUg -3'
miRNA:   3'- guUGCg--GCGGUGGCC---------AGCUG------------CGCCGA- -5'
19254 5' -61.6 NC_004684.1 + 22960 0.67 0.397847
Target:  5'- uCGACuaCGCCACCGGgccggacgccaaCGAgGUGGCc -3'
miRNA:   3'- -GUUGcgGCGGUGGCCa-----------GCUgCGCCGa -5'
19254 5' -61.6 NC_004684.1 + 22790 0.67 0.396988
Target:  5'- gGGCGUgGCUggcgacuucaacacGCUGGUCGAC-CGGCa -3'
miRNA:   3'- gUUGCGgCGG--------------UGGCCAGCUGcGCCGa -5'
19254 5' -61.6 NC_004684.1 + 4903 0.67 0.391004
Target:  5'- ---gGUCGCCACCGGccUCG--GCGGCa -3'
miRNA:   3'- guugCGGCGGUGGCC--AGCugCGCCGa -5'
19254 5' -61.6 NC_004684.1 + 59118 0.67 0.391004
Target:  5'- gUAGCGCCGCa---GGUCGcggcgcACGUGGCg -3'
miRNA:   3'- -GUUGCGGCGguggCCAGC------UGCGCCGa -5'
19254 5' -61.6 NC_004684.1 + 57239 0.67 0.391004
Target:  5'- aAACGCC-CCACCuGGgCGG-GCGGCa -3'
miRNA:   3'- gUUGCGGcGGUGG-CCaGCUgCGCCGa -5'
19254 5' -61.6 NC_004684.1 + 54111 0.67 0.391004
Target:  5'- -cGCGCaccaGCCACCGG-CGGCcaccaGCGcGCUg -3'
miRNA:   3'- guUGCGg---CGGUGGCCaGCUG-----CGC-CGA- -5'
19254 5' -61.6 NC_004684.1 + 48054 0.67 0.391004
Target:  5'- uCAGCGCCucCCGCuCGGccaCGGCGgCGGCg -3'
miRNA:   3'- -GUUGCGGc-GGUG-GCCa--GCUGC-GCCGa -5'
19254 5' -61.6 NC_004684.1 + 7503 0.67 0.391004
Target:  5'- -uGCGCCGCCGCaucggGGUgGACcugccCGGCa -3'
miRNA:   3'- guUGCGGCGGUGg----CCAgCUGc----GCCGa -5'
19254 5' -61.6 NC_004684.1 + 20804 0.67 0.391004
Target:  5'- --cCGCCGUCGCCGccGUCGAgCGCGaCUg -3'
miRNA:   3'- guuGCGGCGGUGGC--CAGCU-GCGCcGA- -5'
19254 5' -61.6 NC_004684.1 + 46554 0.67 0.388458
Target:  5'- aCGACGCCGgUgcgcuugguGCCGGauucccagucgcgcUCGACGgCGGCg -3'
miRNA:   3'- -GUUGCGGCgG---------UGGCC--------------AGCUGC-GCCGa -5'
19254 5' -61.6 NC_004684.1 + 945 0.67 0.382559
Target:  5'- aCAACGCCGCCACCcugacguaaaGUCGuACcuguaCGGCg -3'
miRNA:   3'- -GUUGCGGCGGUGGc---------CAGC-UGc----GCCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.