miRNA display CGI


Results 81 - 100 of 226 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19254 5' -61.6 NC_004684.1 + 6697 0.67 0.382559
Target:  5'- uCGACcUgGCCACC-GUCGGCGCGaGCa -3'
miRNA:   3'- -GUUGcGgCGGUGGcCAGCUGCGC-CGa -5'
19254 5' -61.6 NC_004684.1 + 4164 0.67 0.382559
Target:  5'- cCGACGCCcggcaacgaGCCGCCGGUggccgagaaGAUGgGGCc -3'
miRNA:   3'- -GUUGCGG---------CGGUGGCCAg--------CUGCgCCGa -5'
19254 5' -61.6 NC_004684.1 + 20068 0.67 0.382559
Target:  5'- uCGACGCC-CaCACCGG-CGACaCGGUg -3'
miRNA:   3'- -GUUGCGGcG-GUGGCCaGCUGcGCCGa -5'
19254 5' -61.6 NC_004684.1 + 59288 0.67 0.382559
Target:  5'- uCAAUGCUGCCggugggcagGCCGGUgucggggucgaUGGCGCuGGCa -3'
miRNA:   3'- -GUUGCGGCGG---------UGGCCA-----------GCUGCG-CCGa -5'
19254 5' -61.6 NC_004684.1 + 945 0.67 0.382559
Target:  5'- aCAACGCCGCCACCcugacguaaaGUCGuACcuguaCGGCg -3'
miRNA:   3'- -GUUGCGGCGGUGGc---------CAGC-UGc----GCCGa -5'
19254 5' -61.6 NC_004684.1 + 11969 0.67 0.382559
Target:  5'- -uGCGgCGCCACCG--CGACcgGCGGCa -3'
miRNA:   3'- guUGCgGCGGUGGCcaGCUG--CGCCGa -5'
19254 5' -61.6 NC_004684.1 + 2082 0.67 0.382559
Target:  5'- -cGCGCCaGCUcgcaACUGGUggcgcagcacuaCGGCGCGGCg -3'
miRNA:   3'- guUGCGG-CGG----UGGCCA------------GCUGCGCCGa -5'
19254 5' -61.6 NC_004684.1 + 15814 0.67 0.382559
Target:  5'- -cACGCCGagcgaC-CCGGUgGcGCGCGGCa -3'
miRNA:   3'- guUGCGGCg----GuGGCCAgC-UGCGCCGa -5'
19254 5' -61.6 NC_004684.1 + 64349 0.67 0.382559
Target:  5'- -cACGUC-CUugaacCCGGUCGGCGCGGUc -3'
miRNA:   3'- guUGCGGcGGu----GGCCAGCUGCGCCGa -5'
19254 5' -61.6 NC_004684.1 + 58681 0.67 0.381721
Target:  5'- uCAGCGCCGCCAUgGaguccucGUCGuCGUaGGCg -3'
miRNA:   3'- -GUUGCGGCGGUGgC-------CAGCuGCG-CCGa -5'
19254 5' -61.6 NC_004684.1 + 33565 0.68 0.370942
Target:  5'- --cCGCCGCCGCCGGgcacaccgcccgcCGACGCcgaaccGCUc -3'
miRNA:   3'- guuGCGGCGGUGGCCa------------GCUGCGc-----CGA- -5'
19254 5' -61.6 NC_004684.1 + 41052 0.68 0.366037
Target:  5'- aAugGCCGagcgCACCGcGUCGGCaaucgGCGGCc -3'
miRNA:   3'- gUugCGGCg---GUGGC-CAGCUG-----CGCCGa -5'
19254 5' -61.6 NC_004684.1 + 553 0.68 0.366037
Target:  5'- uCGAgGCCGCCACCgaGGagGACaaGGCc -3'
miRNA:   3'- -GUUgCGGCGGUGG--CCagCUGcgCCGa -5'
19254 5' -61.6 NC_004684.1 + 3364 0.68 0.366037
Target:  5'- aCAcCGCCGaCACCgaGGUCaaGCGCGGCa -3'
miRNA:   3'- -GUuGCGGCgGUGG--CCAGc-UGCGCCGa -5'
19254 5' -61.6 NC_004684.1 + 28060 0.68 0.366037
Target:  5'- ---gGCgGCCAaCCGGccUgGGCGCGGCa -3'
miRNA:   3'- guugCGgCGGU-GGCC--AgCUGCGCCGa -5'
19254 5' -61.6 NC_004684.1 + 24776 0.68 0.366037
Target:  5'- cCGGCaCCggGCCGCUGGUCGAUaCGGCc -3'
miRNA:   3'- -GUUGcGG--CGGUGGCCAGCUGcGCCGa -5'
19254 5' -61.6 NC_004684.1 + 63045 0.68 0.366037
Target:  5'- aCAugGggaCCGCCuaaCGGUUgGugGCGGCUa -3'
miRNA:   3'- -GUugC---GGCGGug-GCCAG-CugCGCCGA- -5'
19254 5' -61.6 NC_004684.1 + 10793 0.68 0.357963
Target:  5'- aCGGCGUCGgCACCGuagCGGCauccgGCGGCUg -3'
miRNA:   3'- -GUUGCGGCgGUGGCca-GCUG-----CGCCGA- -5'
19254 5' -61.6 NC_004684.1 + 31 0.68 0.357963
Target:  5'- -cGCGCCGCaACgUGGUauGCGCGGCa -3'
miRNA:   3'- guUGCGGCGgUG-GCCAgcUGCGCCGa -5'
19254 5' -61.6 NC_004684.1 + 15394 0.68 0.357963
Target:  5'- aCGAgGCCGCCAUCGGg----GCGGCc -3'
miRNA:   3'- -GUUgCGGCGGUGGCCagcugCGCCGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.