miRNA display CGI


Results 101 - 120 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19254 5' -61.6 NC_004684.1 + 31 0.68 0.357963
Target:  5'- -cGCGCCGCaACgUGGUauGCGCGGCa -3'
miRNA:   3'- guUGCGGCGgUG-GCCAgcUGCGCCGa -5'
19254 5' -61.6 NC_004684.1 + 43687 0.68 0.357962
Target:  5'- -cGCGCCGCCGCCcaGGUUGGa--GGCc -3'
miRNA:   3'- guUGCGGCGGUGG--CCAGCUgcgCCGa -5'
19254 5' -61.6 NC_004684.1 + 13104 0.68 0.357962
Target:  5'- cCGAUGCgCGCacccccgGCCGGguggCGGCGCuGGCUg -3'
miRNA:   3'- -GUUGCG-GCGg------UGGCCa---GCUGCG-CCGA- -5'
19254 5' -61.6 NC_004684.1 + 15282 0.68 0.357962
Target:  5'- -uGCGCgGUgCACCugcugggccuGGUCGACGUGGCc -3'
miRNA:   3'- guUGCGgCG-GUGG----------CCAGCUGCGCCGa -5'
19254 5' -61.6 NC_004684.1 + 11825 0.68 0.350014
Target:  5'- -cGCGCCGCUGuCCGG-CGAC-UGGCg -3'
miRNA:   3'- guUGCGGCGGU-GGCCaGCUGcGCCGa -5'
19254 5' -61.6 NC_004684.1 + 23590 0.68 0.350014
Target:  5'- gAACaCCGCCGCCGGUgGuaucaccCGCGcGCUc -3'
miRNA:   3'- gUUGcGGCGGUGGCCAgCu------GCGC-CGA- -5'
19254 5' -61.6 NC_004684.1 + 18246 0.68 0.350014
Target:  5'- aCAACGUgGCCGCCa-UCGACGgcaaCGGCa -3'
miRNA:   3'- -GUUGCGgCGGUGGccAGCUGC----GCCGa -5'
19254 5' -61.6 NC_004684.1 + 28405 0.68 0.350014
Target:  5'- -cGCGUacgUGCCGCCGGUUGACcUGGUg -3'
miRNA:   3'- guUGCG---GCGGUGGCCAGCUGcGCCGa -5'
19254 5' -61.6 NC_004684.1 + 33904 0.68 0.350013
Target:  5'- aCAGgGCCGCCGCCGcGUCcacCGCaGCc -3'
miRNA:   3'- -GUUgCGGCGGUGGC-CAGcu-GCGcCGa -5'
19254 5' -61.6 NC_004684.1 + 52892 0.68 0.350013
Target:  5'- -cACG-UGCCACCGG-CGAC-CGGCg -3'
miRNA:   3'- guUGCgGCGGUGGCCaGCUGcGCCGa -5'
19254 5' -61.6 NC_004684.1 + 33694 0.68 0.350013
Target:  5'- --cCGCUGCCGCUGG-CGaggguguccaGCGCGGUg -3'
miRNA:   3'- guuGCGGCGGUGGCCaGC----------UGCGCCGa -5'
19254 5' -61.6 NC_004684.1 + 65130 0.68 0.350013
Target:  5'- gCAAUGcCCGCCGCCGcGcugaUCaGCGUGGCg -3'
miRNA:   3'- -GUUGC-GGCGGUGGC-C----AGcUGCGCCGa -5'
19254 5' -61.6 NC_004684.1 + 35677 0.68 0.342191
Target:  5'- --gUGUCGCCACCGG-CGAUGaaccgGGCg -3'
miRNA:   3'- guuGCGGCGGUGGCCaGCUGCg----CCGa -5'
19254 5' -61.6 NC_004684.1 + 65801 0.68 0.342191
Target:  5'- cCGAUGCCGUgCACCGGgcaggUGACccggaggcaccgGCGGCUc -3'
miRNA:   3'- -GUUGCGGCG-GUGGCCa----GCUG------------CGCCGA- -5'
19254 5' -61.6 NC_004684.1 + 22464 0.68 0.342191
Target:  5'- gAGCGUCGCCACCGacuaccCGGCGCG-Ca -3'
miRNA:   3'- gUUGCGGCGGUGGCca----GCUGCGCcGa -5'
19254 5' -61.6 NC_004684.1 + 61507 0.68 0.342191
Target:  5'- --cCGCCGCCAcCCGGUCaGGC-UGGUg -3'
miRNA:   3'- guuGCGGCGGU-GGCCAG-CUGcGCCGa -5'
19254 5' -61.6 NC_004684.1 + 30406 0.68 0.342191
Target:  5'- cCGGCGCUGCCguggcaacACCuGuUCGACGgCGGCg -3'
miRNA:   3'- -GUUGCGGCGG--------UGGcC-AGCUGC-GCCGa -5'
19254 5' -61.6 NC_004684.1 + 42205 0.68 0.342191
Target:  5'- cCAGCGCCugGCCaACCaGGUCGgagaugGCGuCGGCa -3'
miRNA:   3'- -GUUGCGG--CGG-UGG-CCAGC------UGC-GCCGa -5'
19254 5' -61.6 NC_004684.1 + 41889 0.68 0.342191
Target:  5'- gAACaGCCGCuCGCCGGUCG-CcUGGCc -3'
miRNA:   3'- gUUG-CGGCG-GUGGCCAGCuGcGCCGa -5'
19254 5' -61.6 NC_004684.1 + 52734 0.68 0.342191
Target:  5'- aGGCGCUGuCCuCCaGGUCGuCGUGGCc -3'
miRNA:   3'- gUUGCGGC-GGuGG-CCAGCuGCGCCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.