miRNA display CGI


Results 61 - 80 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19254 5' -61.6 NC_004684.1 + 15394 0.68 0.357963
Target:  5'- aCGAgGCCGCCAUCGGg----GCGGCc -3'
miRNA:   3'- -GUUgCGGCGGUGGCCagcugCGCCGa -5'
19254 5' -61.6 NC_004684.1 + 15814 0.67 0.382559
Target:  5'- -cACGCCGagcgaC-CCGGUgGcGCGCGGCa -3'
miRNA:   3'- guUGCGGCg----GuGGCCAgC-UGCGCCGa -5'
19254 5' -61.6 NC_004684.1 + 16255 0.74 0.151235
Target:  5'- -uACGUCGCUcgcccgguguucgcGCCGGgccCGACGCGGCg -3'
miRNA:   3'- guUGCGGCGG--------------UGGCCa--GCUGCGCCGa -5'
19254 5' -61.6 NC_004684.1 + 17293 0.73 0.168964
Target:  5'- gGGgGCCaGCCGCCuGGUCGugGUGGaCUg -3'
miRNA:   3'- gUUgCGG-CGGUGG-CCAGCugCGCC-GA- -5'
19254 5' -61.6 NC_004684.1 + 17378 0.7 0.277522
Target:  5'- aGGCGUaucgcacuuuCGUCACCGGUgcauuugaCGAUGCGGCg -3'
miRNA:   3'- gUUGCG----------GCGGUGGCCA--------GCUGCGCCGa -5'
19254 5' -61.6 NC_004684.1 + 17518 0.69 0.284199
Target:  5'- gAGCGCggUGCCacGCCGGaCGACGUGGUc -3'
miRNA:   3'- gUUGCG--GCGG--UGGCCaGCUGCGCCGa -5'
19254 5' -61.6 NC_004684.1 + 17728 0.68 0.357963
Target:  5'- aCAACuGCgGUCGcCCGGaaucCGGCGCGGCc -3'
miRNA:   3'- -GUUG-CGgCGGU-GGCCa---GCUGCGCCGa -5'
19254 5' -61.6 NC_004684.1 + 18071 0.73 0.177828
Target:  5'- cCAugGCCGCCgACgGGUCGAUccugGaCGGCa -3'
miRNA:   3'- -GUugCGGCGG-UGgCCAGCUG----C-GCCGa -5'
19254 5' -61.6 NC_004684.1 + 18246 0.68 0.350014
Target:  5'- aCAACGUgGCCGCCa-UCGACGgcaaCGGCa -3'
miRNA:   3'- -GUUGCGgCGGUGGccAGCUGC----GCCGa -5'
19254 5' -61.6 NC_004684.1 + 18335 0.75 0.111254
Target:  5'- cCggUGCCGCCcccggagccgACCGG-CGGCGCGGUg -3'
miRNA:   3'- -GuuGCGGCGG----------UGGCCaGCUGCGCCGa -5'
19254 5' -61.6 NC_004684.1 + 18427 0.7 0.270971
Target:  5'- gGGCGCa-CCGgCGGcCGACGUGGCUc -3'
miRNA:   3'- gUUGCGgcGGUgGCCaGCUGCGCCGA- -5'
19254 5' -61.6 NC_004684.1 + 18656 0.66 0.472185
Target:  5'- aCAugGCCugccacaucGCCACCGGcaaGCGCuGGCa -3'
miRNA:   3'- -GUugCGG---------CGGUGGCCagcUGCG-CCGa -5'
19254 5' -61.6 NC_004684.1 + 18671 0.67 0.408255
Target:  5'- --gUGCCGCCGCUGGgCG-CGaCGGUa -3'
miRNA:   3'- guuGCGGCGGUGGCCaGCuGC-GCCGa -5'
19254 5' -61.6 NC_004684.1 + 18719 0.66 0.444141
Target:  5'- gGugGCaCGCUcucGCUGGaUGugGCGGCg -3'
miRNA:   3'- gUugCG-GCGG---UGGCCaGCugCGCCGa -5'
19254 5' -61.6 NC_004684.1 + 19327 0.68 0.326928
Target:  5'- -uACGCCGCCGCCguGGcCGA-GCGGg- -3'
miRNA:   3'- guUGCGGCGGUGG--CCaGCUgCGCCga -5'
19254 5' -61.6 NC_004684.1 + 19928 0.66 0.443222
Target:  5'- --gUGCCGCCGCUGGUagCGACuaccucaGCGaGCg -3'
miRNA:   3'- guuGCGGCGGUGGCCA--GCUG-------CGC-CGa -5'
19254 5' -61.6 NC_004684.1 + 20068 0.67 0.382559
Target:  5'- uCGACGCC-CaCACCGG-CGACaCGGUg -3'
miRNA:   3'- -GUUGCGGcG-GUGGCCaGCUGcGCCGa -5'
19254 5' -61.6 NC_004684.1 + 20471 0.7 0.264544
Target:  5'- aCAcCGCCGuUgGCCGGUCcuggggGAUGCGGCg -3'
miRNA:   3'- -GUuGCGGC-GgUGGCCAG------CUGCGCCGa -5'
19254 5' -61.6 NC_004684.1 + 20804 0.67 0.391004
Target:  5'- --cCGCCGUCGCCGccGUCGAgCGCGaCUg -3'
miRNA:   3'- guuGCGGCGGUGGC--CAGCU-GCGCcGA- -5'
19254 5' -61.6 NC_004684.1 + 21571 0.66 0.44414
Target:  5'- cCGAgGCCGUCACCgGGUCaAUGCcGCa -3'
miRNA:   3'- -GUUgCGGCGGUGG-CCAGcUGCGcCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.