miRNA display CGI


Results 81 - 100 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19254 5' -61.6 NC_004684.1 + 22192 0.74 0.140984
Target:  5'- -cGCGCUGCCGCUGGa--GCGCGGCg -3'
miRNA:   3'- guUGCGGCGGUGGCCagcUGCGCCGa -5'
19254 5' -61.6 NC_004684.1 + 22328 0.72 0.201813
Target:  5'- cCGugGcCCGCCAcCCGGUacaggcgGugGCGGCg -3'
miRNA:   3'- -GUugC-GGCGGU-GGCCAg------CugCGCCGa -5'
19254 5' -61.6 NC_004684.1 + 22432 0.78 0.072405
Target:  5'- uCAACGCCaUCGCC-GUCGGCGCGGCg -3'
miRNA:   3'- -GUUGCGGcGGUGGcCAGCUGCGCCGa -5'
19254 5' -61.6 NC_004684.1 + 22464 0.68 0.342191
Target:  5'- gAGCGUCGCCACCGacuaccCGGCGCG-Ca -3'
miRNA:   3'- gUUGCGGCGGUGGCca----GCUGCGCcGa -5'
19254 5' -61.6 NC_004684.1 + 22731 0.67 0.408254
Target:  5'- -cGCGCCGCCGCagcagCGGgUGACGCagugGGCc -3'
miRNA:   3'- guUGCGGCGGUG-----GCCaGCUGCG----CCGa -5'
19254 5' -61.6 NC_004684.1 + 22790 0.67 0.396988
Target:  5'- gGGCGUgGCUggcgacuucaacacGCUGGUCGAC-CGGCa -3'
miRNA:   3'- gUUGCGgCGG--------------UGGCCAGCUGcGCCGa -5'
19254 5' -61.6 NC_004684.1 + 22960 0.67 0.397847
Target:  5'- uCGACuaCGCCACCGGgccggacgccaaCGAgGUGGCc -3'
miRNA:   3'- -GUUGcgGCGGUGGCCa-----------GCUgCGCCGa -5'
19254 5' -61.6 NC_004684.1 + 23208 0.68 0.334496
Target:  5'- cCAAgGCCGCCGgUGG-CGACgGCGGg- -3'
miRNA:   3'- -GUUgCGGCGGUgGCCaGCUG-CGCCga -5'
19254 5' -61.6 NC_004684.1 + 23590 0.68 0.350014
Target:  5'- gAACaCCGCCGCCGGUgGuaucaccCGCGcGCUc -3'
miRNA:   3'- gUUGcGGCGGUGGCCAgCu------GCGC-CGA- -5'
19254 5' -61.6 NC_004684.1 + 24776 0.68 0.366037
Target:  5'- cCGGCaCCggGCCGCUGGUCGAUaCGGCc -3'
miRNA:   3'- -GUUGcGG--CGGUGGCCAGCUGcGCCGa -5'
19254 5' -61.6 NC_004684.1 + 24906 0.69 0.30499
Target:  5'- gAugGCCGCCGCCG--CGAUcagcgcgcuggGCGGCg -3'
miRNA:   3'- gUugCGGCGGUGGCcaGCUG-----------CGCCGa -5'
19254 5' -61.6 NC_004684.1 + 25018 0.7 0.258242
Target:  5'- uCAGCGCCGgUgcaGCUGGaggcggcaUCGACGUGGCg -3'
miRNA:   3'- -GUUGCGGCgG---UGGCC--------AGCUGCGCCGa -5'
19254 5' -61.6 NC_004684.1 + 25037 0.66 0.453386
Target:  5'- --uUGCUGCCuuuCCGGUUGGCGauguaGGUg -3'
miRNA:   3'- guuGCGGCGGu--GGCCAGCUGCg----CCGa -5'
19254 5' -61.6 NC_004684.1 + 25381 0.66 0.462736
Target:  5'- uCAGCGCCuacGCCGCCG--CGcACaGCGGCg -3'
miRNA:   3'- -GUUGCGG---CGGUGGCcaGC-UG-CGCCGa -5'
19254 5' -61.6 NC_004684.1 + 25626 0.7 0.264544
Target:  5'- gCGACGCUGCCcaacgguguGCCGuUCGAgaGCGGCg -3'
miRNA:   3'- -GUUGCGGCGG---------UGGCcAGCUg-CGCCGa -5'
19254 5' -61.6 NC_004684.1 + 25817 0.69 0.304989
Target:  5'- aAAUGCCGCCGCCGaagcaagguGUCGcACcCGGCc -3'
miRNA:   3'- gUUGCGGCGGUGGC---------CAGC-UGcGCCGa -5'
19254 5' -61.6 NC_004684.1 + 26230 0.7 0.246007
Target:  5'- -cACcCCGCgCGCgGGUcCGGCGCGGCg -3'
miRNA:   3'- guUGcGGCG-GUGgCCA-GCUGCGCCGa -5'
19254 5' -61.6 NC_004684.1 + 26308 0.69 0.289631
Target:  5'- gCAGCucgGCCagGCCGCCGGgccgccgauugcCGACGCGGUg -3'
miRNA:   3'- -GUUG---CGG--CGGUGGCCa-----------GCUGCGCCGa -5'
19254 5' -61.6 NC_004684.1 + 26403 0.83 0.030061
Target:  5'- cCAACGCCGCCACCGG-CG-CGCuGGCa -3'
miRNA:   3'- -GUUGCGGCGGUGGCCaGCuGCG-CCGa -5'
19254 5' -61.6 NC_004684.1 + 26426 0.67 0.408255
Target:  5'- nCAGCGggguUCGCCGCCGGU-GGCccgguguacgGCGGCa -3'
miRNA:   3'- -GUUGC----GGCGGUGGCCAgCUG----------CGCCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.