miRNA display CGI


Results 61 - 80 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19254 5' -61.6 NC_004684.1 + 51713 0.69 0.297932
Target:  5'- uCggUGCCGCCGCUGGccaCGACGUuggagaGGCc -3'
miRNA:   3'- -GuuGCGGCGGUGGCCa--GCUGCG------CCGa -5'
19254 5' -61.6 NC_004684.1 + 51569 0.75 0.114243
Target:  5'- gCGAUGCCgcgcGCCACCGGgucgcUCGGCGUGGUg -3'
miRNA:   3'- -GUUGCGG----CGGUGGCC-----AGCUGCGCCGa -5'
19254 5' -61.6 NC_004684.1 + 51215 0.67 0.420609
Target:  5'- uCGugGCCagcaggaucaccuugGCCaucgGCCGGUCGAUGCcGCa -3'
miRNA:   3'- -GUugCGG---------------CGG----UGGCCAGCUGCGcCGa -5'
19254 5' -61.6 NC_004684.1 + 49085 0.66 0.443222
Target:  5'- aCGuCGCCGCCaACCGGcaggugccacaggUCGcCGuCGGCg -3'
miRNA:   3'- -GUuGCGGCGG-UGGCC-------------AGCuGC-GCCGa -5'
19254 5' -61.6 NC_004684.1 + 49043 0.74 0.136992
Target:  5'- gCAcCG-CGCCGCCGGUCGGCuccggggGCGGCa -3'
miRNA:   3'- -GUuGCgGCGGUGGCCAGCUG-------CGCCGa -5'
19254 5' -61.6 NC_004684.1 + 48725 0.71 0.234256
Target:  5'- cCAGCGCuUGCCGgUGG-CGAUGUGGCa -3'
miRNA:   3'- -GUUGCG-GCGGUgGCCaGCUGCGCCGa -5'
19254 5' -61.6 NC_004684.1 + 48685 0.69 0.304989
Target:  5'- gAGCG-UGCCACCGGUcagCGACuGCuGGCUg -3'
miRNA:   3'- gUUGCgGCGGUGGCCA---GCUG-CG-CCGA- -5'
19254 5' -61.6 NC_004684.1 + 48064 0.66 0.444141
Target:  5'- uGGCGguuUCGaCCACCGGUucCGGCGuCGGCc -3'
miRNA:   3'- gUUGC---GGC-GGUGGCCA--GCUGC-GCCGa -5'
19254 5' -61.6 NC_004684.1 + 48054 0.67 0.391004
Target:  5'- uCAGCGCCucCCGCuCGGccaCGGCGgCGGCg -3'
miRNA:   3'- -GUUGCGGc-GGUG-GCCa--GCUGC-GCCGa -5'
19254 5' -61.6 NC_004684.1 + 47677 0.69 0.284199
Target:  5'- uCAGCGCCuucuuGUCgaaggugauGCUGGUUGGCGCGGUUg -3'
miRNA:   3'- -GUUGCGG-----CGG---------UGGCCAGCUGCGCCGA- -5'
19254 5' -61.6 NC_004684.1 + 47183 0.68 0.326178
Target:  5'- cCAGgGCCGCCGCUGcG-CGGCgaacgguGCGGCg -3'
miRNA:   3'- -GUUgCGGCGGUGGC-CaGCUG-------CGCCGa -5'
19254 5' -61.6 NC_004684.1 + 47079 0.71 0.211641
Target:  5'- gAugGCCGCCGCCGccaugguGUCGGCGCacuucucGCUg -3'
miRNA:   3'- gUugCGGCGGUGGC-------CAGCUGCGc------CGA- -5'
19254 5' -61.6 NC_004684.1 + 46970 0.69 0.319487
Target:  5'- gCAGCgGCUGCCACCaGUaccCGAUGCGGa- -3'
miRNA:   3'- -GUUG-CGGCGGUGGcCA---GCUGCGCCga -5'
19254 5' -61.6 NC_004684.1 + 46786 0.75 0.130342
Target:  5'- --cCGUCGaCCGuCCGGUCGugGCGGUa -3'
miRNA:   3'- guuGCGGC-GGU-GGCCAGCugCGCCGa -5'
19254 5' -61.6 NC_004684.1 + 46718 0.7 0.263909
Target:  5'- gAGCG-CGCCACCGacauuacGUUGAgGCGGCg -3'
miRNA:   3'- gUUGCgGCGGUGGC-------CAGCUgCGCCGa -5'
19254 5' -61.6 NC_004684.1 + 46554 0.67 0.388458
Target:  5'- aCGACGCCGgUgcgcuugguGCCGGauucccagucgcgcUCGACGgCGGCg -3'
miRNA:   3'- -GUUGCGGCgG---------UGGCC--------------AGCUGC-GCCGa -5'
19254 5' -61.6 NC_004684.1 + 45302 0.69 0.291002
Target:  5'- -cGCGCUGUCGuuGG-CGGCGCGuGCg -3'
miRNA:   3'- guUGCGGCGGUggCCaGCUGCGC-CGa -5'
19254 5' -61.6 NC_004684.1 + 45051 0.66 0.472185
Target:  5'- --cCGCCGCCACCGccuGUaccggGugGCGGg- -3'
miRNA:   3'- guuGCGGCGGUGGC---CAg----CugCGCCga -5'
19254 5' -61.6 NC_004684.1 + 44185 0.66 0.435002
Target:  5'- --cCGUCGCCACCGG-CGGCcuUGGUg -3'
miRNA:   3'- guuGCGGCGGUGGCCaGCUGc-GCCGa -5'
19254 5' -61.6 NC_004684.1 + 43856 0.66 0.44414
Target:  5'- cCGAUGCCGCCGa-GGUUGGugaGCaGGCUg -3'
miRNA:   3'- -GUUGCGGCGGUggCCAGCUg--CG-CCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.