miRNA display CGI


Results 81 - 100 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19254 5' -61.6 NC_004684.1 + 61310 0.69 0.30074
Target:  5'- gCAGCaCCGCCGCCGGgccgccgcccucggCGGCGUagguGGCg -3'
miRNA:   3'- -GUUGcGGCGGUGGCCa-------------GCUGCG----CCGa -5'
19254 5' -61.6 NC_004684.1 + 42137 0.69 0.302151
Target:  5'- uCAACGCCgacGCCACCacgcacggccuaugGGUCGagagcgccgcacuGCGCGGUg -3'
miRNA:   3'- -GUUGCGG---CGGUGG--------------CCAGC-------------UGCGCCGa -5'
19254 5' -61.6 NC_004684.1 + 24906 0.69 0.30499
Target:  5'- gAugGCCGCCGCCG--CGAUcagcgcgcuggGCGGCg -3'
miRNA:   3'- gUugCGGCGGUGGCcaGCUG-----------CGCCGa -5'
19254 5' -61.6 NC_004684.1 + 32637 0.69 0.30499
Target:  5'- aCGACaCCGCCgagaucguGCCGGUUGGCaaggccugGCGGCg -3'
miRNA:   3'- -GUUGcGGCGG--------UGGCCAGCUG--------CGCCGa -5'
19254 5' -61.6 NC_004684.1 + 41441 0.69 0.30499
Target:  5'- gCGGCGgUGCCGCCGGUgucaGugG-GGCUg -3'
miRNA:   3'- -GUUGCgGCGGUGGCCAg---CugCgCCGA- -5'
19254 5' -61.6 NC_004684.1 + 59854 0.69 0.30499
Target:  5'- gAACGCCGCCACggcggccaGGUCGGucCG-GGCa -3'
miRNA:   3'- gUUGCGGCGGUGg-------CCAGCU--GCgCCGa -5'
19254 5' -61.6 NC_004684.1 + 12877 0.69 0.312175
Target:  5'- cCGAgGCCGCCGCCGGggagccugcgcUCGccgccaGCGGUg -3'
miRNA:   3'- -GUUgCGGCGGUGGCC-----------AGCug----CGCCGa -5'
19254 5' -61.6 NC_004684.1 + 61537 0.69 0.284199
Target:  5'- aGGCGCUggcguGCCGCUGGUUGGuccgggUGCGGCa -3'
miRNA:   3'- gUUGCGG-----CGGUGGCCAGCU------GCGCCGa -5'
19254 5' -61.6 NC_004684.1 + 47677 0.69 0.284199
Target:  5'- uCAGCGCCuucuuGUCgaaggugauGCUGGUUGGCGCGGUUg -3'
miRNA:   3'- -GUUGCGG-----CGG---------UGGCCAGCUGCGCCGA- -5'
19254 5' -61.6 NC_004684.1 + 17518 0.69 0.284199
Target:  5'- gAGCGCggUGCCacGCCGGaCGACGUGGUc -3'
miRNA:   3'- gUUGCG--GCGG--UGGCCaGCUGCGCCGa -5'
19254 5' -61.6 NC_004684.1 + 56152 0.7 0.258242
Target:  5'- gAGCGUgGCC-CUGGcCGACGaCGGCg -3'
miRNA:   3'- gUUGCGgCGGuGGCCaGCUGC-GCCGa -5'
19254 5' -61.6 NC_004684.1 + 46718 0.7 0.263909
Target:  5'- gAGCG-CGCCACCGacauuacGUUGAgGCGGCg -3'
miRNA:   3'- gUUGCgGCGGUGGC-------CAGCUgCGCCGa -5'
19254 5' -61.6 NC_004684.1 + 3796 0.7 0.264544
Target:  5'- uGACGCCGCCGCCuuggcGGUCaaggaucugcugGGCGCguucGGCg -3'
miRNA:   3'- gUUGCGGCGGUGG-----CCAG------------CUGCG----CCGa -5'
19254 5' -61.6 NC_004684.1 + 25626 0.7 0.264544
Target:  5'- gCGACGCUGCCcaacgguguGCCGuUCGAgaGCGGCg -3'
miRNA:   3'- -GUUGCGGCGG---------UGGCcAGCUg-CGCCGa -5'
19254 5' -61.6 NC_004684.1 + 9864 0.7 0.270971
Target:  5'- ---aGCUGCCGCCGGauccCGACGCcGCg -3'
miRNA:   3'- guugCGGCGGUGGCCa---GCUGCGcCGa -5'
19254 5' -61.6 NC_004684.1 + 18427 0.7 0.270971
Target:  5'- gGGCGCa-CCGgCGGcCGACGUGGCUc -3'
miRNA:   3'- gUUGCGgcGGUgGCCaGCUGCGCCGA- -5'
19254 5' -61.6 NC_004684.1 + 17378 0.7 0.277522
Target:  5'- aGGCGUaucgcacuuuCGUCACCGGUgcauuugaCGAUGCGGCg -3'
miRNA:   3'- gUUGCG----------GCGGUGGCCA--------GCUGCGCCGa -5'
19254 5' -61.6 NC_004684.1 + 698 0.7 0.277522
Target:  5'- cCGAgGUCaGCCGCCGGUgGACGgccUGGCg -3'
miRNA:   3'- -GUUgCGG-CGGUGGCCAgCUGC---GCCGa -5'
19254 5' -61.6 NC_004684.1 + 60622 0.7 0.277522
Target:  5'- cCGGCGCaCGUCGCCcaugcgcagGGUCGAgGgGGCa -3'
miRNA:   3'- -GUUGCG-GCGGUGG---------CCAGCUgCgCCGa -5'
19254 5' -61.6 NC_004684.1 + 46970 0.69 0.319487
Target:  5'- gCAGCgGCUGCCACCaGUaccCGAUGCGGa- -3'
miRNA:   3'- -GUUG-CGGCGGUGGcCA---GCUGCGCCga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.