miRNA display CGI


Results 41 - 60 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19254 5' -61.6 NC_004684.1 + 6092 0.69 0.297932
Target:  5'- gCGGCGgUGCUGCCGGaaaUCGACcCGGCg -3'
miRNA:   3'- -GUUGCgGCGGUGGCC---AGCUGcGCCGa -5'
19254 5' -61.6 NC_004684.1 + 10886 0.73 0.177828
Target:  5'- cCGACGCCGgugaCCACCcgGGUCGGCGCguacaGGCc -3'
miRNA:   3'- -GUUGCGGC----GGUGG--CCAGCUGCG-----CCGa -5'
19254 5' -61.6 NC_004684.1 + 30041 0.76 0.105495
Target:  5'- gAACGCgCGCuCGCCGGUCGguuGCGGCg -3'
miRNA:   3'- gUUGCG-GCG-GUGGCCAGCug-CGCCGa -5'
19254 5' -61.6 NC_004684.1 + 515 0.69 0.293759
Target:  5'- gAAgGUCGCCACCGG-CGcugacgugcuggccaGCGCGGUc -3'
miRNA:   3'- gUUgCGGCGGUGGCCaGC---------------UGCGCCGa -5'
19254 5' -61.6 NC_004684.1 + 919 0.77 0.085151
Target:  5'- ---aGCCGCCACCGGguggCGGCGUGGa- -3'
miRNA:   3'- guugCGGCGGUGGCCa---GCUGCGCCga -5'
19254 5' -61.6 NC_004684.1 + 65130 0.68 0.350013
Target:  5'- gCAAUGcCCGCCGCCGcGcugaUCaGCGUGGCg -3'
miRNA:   3'- -GUUGC-GGCGGUGGC-C----AGcUGCGCCGa -5'
19254 5' -61.6 NC_004684.1 + 51569 0.75 0.114243
Target:  5'- gCGAUGCCgcgcGCCACCGGgucgcUCGGCGUGGUg -3'
miRNA:   3'- -GUUGCGG----CGGUGGCC-----AGCUGCGCCGa -5'
19254 5' -61.6 NC_004684.1 + 33694 0.68 0.350013
Target:  5'- --cCGCUGCCGCUGG-CGaggguguccaGCGCGGUg -3'
miRNA:   3'- guuGCGGCGGUGGCCaGC----------UGCGCCGa -5'
19254 5' -61.6 NC_004684.1 + 41889 0.68 0.342191
Target:  5'- gAACaGCCGCuCGCCGGUCG-CcUGGCc -3'
miRNA:   3'- gUUG-CGGCG-GUGGCCAGCuGcGCCGa -5'
19254 5' -61.6 NC_004684.1 + 67230 0.68 0.326927
Target:  5'- cCAAC-CCgGUCACCGGuUCGAC-CGGCg -3'
miRNA:   3'- -GUUGcGG-CGGUGGCC-AGCUGcGCCGa -5'
19254 5' -61.6 NC_004684.1 + 55565 0.69 0.319487
Target:  5'- -cGCGCCaGUCGCCGGacagCGGCGCGcucGCg -3'
miRNA:   3'- guUGCGG-CGGUGGCCa---GCUGCGC---CGa -5'
19254 5' -61.6 NC_004684.1 + 55841 0.69 0.304989
Target:  5'- ---aGCCGCUgugguugcgggGCgGGUCGAUGUGGCc -3'
miRNA:   3'- guugCGGCGG-----------UGgCCAGCUGCGCCGa -5'
19254 5' -61.6 NC_004684.1 + 48685 0.69 0.304989
Target:  5'- gAGCG-UGCCACCGGUcagCGACuGCuGGCUg -3'
miRNA:   3'- gUUGCgGCGGUGGCCA---GCUG-CG-CCGA- -5'
19254 5' -61.6 NC_004684.1 + 30655 0.69 0.284199
Target:  5'- uCAGCGCCGggaCgGCgaacaGGUCGAUGCGGUa -3'
miRNA:   3'- -GUUGCGGC---GgUGg----CCAGCUGCGCCGa -5'
19254 5' -61.6 NC_004684.1 + 20471 0.7 0.264544
Target:  5'- aCAcCGCCGuUgGCCGGUCcuggggGAUGCGGCg -3'
miRNA:   3'- -GUuGCGGC-GgUGGCCAG------CUGCGCCGa -5'
19254 5' -61.6 NC_004684.1 + 11425 0.71 0.240071
Target:  5'- aGACGCCGaugacCCGCUGGagcgCGGCGuCGGCg -3'
miRNA:   3'- gUUGCGGC-----GGUGGCCa---GCUGC-GCCGa -5'
19254 5' -61.6 NC_004684.1 + 4457 0.72 0.196801
Target:  5'- -cGCGCCGCgCGCUGGUCGGCuucgucacCGGCc -3'
miRNA:   3'- guUGCGGCG-GUGGCCAGCUGc-------GCCGa -5'
19254 5' -61.6 NC_004684.1 + 1621 0.73 0.173345
Target:  5'- -uGCGCgCGcCCACCGG-CG-CGCGGCg -3'
miRNA:   3'- guUGCG-GC-GGUGGCCaGCuGCGCCGa -5'
19254 5' -61.6 NC_004684.1 + 61309 0.73 0.164259
Target:  5'- aCGAgGCCGCCcCCGGcaUCGgcuaccaGCGCGGCg -3'
miRNA:   3'- -GUUgCGGCGGuGGCC--AGC-------UGCGCCGa -5'
19254 5' -61.6 NC_004684.1 + 61474 0.75 0.126963
Target:  5'- cCAGCGCgGCCAgCCGGUCGuGCGCGaucaGCg -3'
miRNA:   3'- -GUUGCGgCGGU-GGCCAGC-UGCGC----CGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.