miRNA display CGI


Results 61 - 80 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19254 5' -61.6 NC_004684.1 + 48685 0.69 0.304989
Target:  5'- gAGCG-UGCCACCGGUcagCGACuGCuGGCUg -3'
miRNA:   3'- gUUGCgGCGGUGGCCA---GCUG-CG-CCGA- -5'
19254 5' -61.6 NC_004684.1 + 9049 0.69 0.319487
Target:  5'- gCAACGCCagcaggGCCACCGGgcgcgccaUGACcCGGCg -3'
miRNA:   3'- -GUUGCGG------CGGUGGCCa-------GCUGcGCCGa -5'
19254 5' -61.6 NC_004684.1 + 40791 0.75 0.121725
Target:  5'- uGACGCCGCCGCCGGUggCGAacccgcgcacaccgcCGCGcGCc -3'
miRNA:   3'- gUUGCGGCGGUGGCCA--GCU---------------GCGC-CGa -5'
19254 5' -61.6 NC_004684.1 + 49043 0.74 0.136992
Target:  5'- gCAcCG-CGCCGCCGGUCGGCuccggggGCGGCa -3'
miRNA:   3'- -GUuGCgGCGGUGGCCAGCUG-------CGCCGa -5'
19254 5' -61.6 NC_004684.1 + 17293 0.73 0.168964
Target:  5'- gGGgGCCaGCCGCCuGGUCGugGUGGaCUg -3'
miRNA:   3'- gUUgCGG-CGGUGG-CCAGCugCGCC-GA- -5'
19254 5' -61.6 NC_004684.1 + 5902 0.73 0.177828
Target:  5'- gAGCGCCGCCGCCu----GCGCGGCg -3'
miRNA:   3'- gUUGCGGCGGUGGccagcUGCGCCGa -5'
19254 5' -61.6 NC_004684.1 + 47079 0.71 0.211641
Target:  5'- gAugGCCGCCGCCGccaugguGUCGGCGCacuucucGCUg -3'
miRNA:   3'- gUugCGGCGGUGGC-------CAGCUGCGc------CGA- -5'
19254 5' -61.6 NC_004684.1 + 26230 0.7 0.246007
Target:  5'- -cACcCCGCgCGCgGGUcCGGCGCGGCg -3'
miRNA:   3'- guUGcGGCG-GUGgCCA-GCUGCGCCGa -5'
19254 5' -61.6 NC_004684.1 + 56613 0.7 0.264544
Target:  5'- cCGACGCCGUCGCgGGU-GuCGCgGGCa -3'
miRNA:   3'- -GUUGCGGCGGUGgCCAgCuGCG-CCGa -5'
19254 5' -61.6 NC_004684.1 + 39966 0.69 0.284199
Target:  5'- cCAAUGCCGCCACCaugcGGUCaaagaGAUGCGuCUg -3'
miRNA:   3'- -GUUGCGGCGGUGG----CCAG-----CUGCGCcGA- -5'
19254 5' -61.6 NC_004684.1 + 62486 0.67 0.408254
Target:  5'- aUggUGCCGCCgagGCCGGU-GGCGaccaGGCc -3'
miRNA:   3'- -GuuGCGGCGG---UGGCCAgCUGCg---CCGa -5'
19254 5' -61.6 NC_004684.1 + 7937 0.67 0.39957
Target:  5'- aCAuCGCCGCCgaccggcgcacACCGGUgGGCaaggccgccagGCGGCc -3'
miRNA:   3'- -GUuGCGGCGG-----------UGGCCAgCUG-----------CGCCGa -5'
19254 5' -61.6 NC_004684.1 + 12869 0.68 0.326927
Target:  5'- aCGGCGCuCGuacccCCGCCGGUgaGCGCGGUa -3'
miRNA:   3'- -GUUGCG-GC-----GGUGGCCAgcUGCGCCGa -5'
19254 5' -61.6 NC_004684.1 + 61420 0.68 0.333733
Target:  5'- gGACuUCGCUcgGCCGGUCGcucaccgGCGCGGCc -3'
miRNA:   3'- gUUGcGGCGG--UGGCCAGC-------UGCGCCGa -5'
19254 5' -61.6 NC_004684.1 + 33694 0.68 0.350013
Target:  5'- --cCGCUGCCGCUGG-CGaggguguccaGCGCGGUg -3'
miRNA:   3'- guuGCGGCGGUGGCCaGC----------UGCGCCGa -5'
19254 5' -61.6 NC_004684.1 + 65130 0.68 0.350013
Target:  5'- gCAAUGcCCGCCGCCGcGcugaUCaGCGUGGCg -3'
miRNA:   3'- -GUUGC-GGCGGUGGC-C----AGcUGCGCCGa -5'
19254 5' -61.6 NC_004684.1 + 28060 0.68 0.366037
Target:  5'- ---gGCgGCCAaCCGGccUgGGCGCGGCa -3'
miRNA:   3'- guugCGgCGGU-GGCC--AgCUGCGCCGa -5'
19254 5' -61.6 NC_004684.1 + 3364 0.68 0.366037
Target:  5'- aCAcCGCCGaCACCgaGGUCaaGCGCGGCa -3'
miRNA:   3'- -GUuGCGGCgGUGG--CCAGc-UGCGCCGa -5'
19254 5' -61.6 NC_004684.1 + 20068 0.67 0.382559
Target:  5'- uCGACGCC-CaCACCGG-CGACaCGGUg -3'
miRNA:   3'- -GUUGCGGcG-GUGGCCaGCUGcGCCGa -5'
19254 5' -61.6 NC_004684.1 + 48054 0.67 0.391004
Target:  5'- uCAGCGCCucCCGCuCGGccaCGGCGgCGGCg -3'
miRNA:   3'- -GUUGCGGc-GGUG-GCCa--GCUGC-GCCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.