miRNA display CGI


Results 81 - 100 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19254 5' -61.6 NC_004684.1 + 10631 0.68 0.332212
Target:  5'- uCGGCGUCGUCACCaccguggucuGGUgccgguucccgugcUGGCGCGGCa -3'
miRNA:   3'- -GUUGCGGCGGUGG----------CCA--------------GCUGCGCCGa -5'
19254 5' -61.6 NC_004684.1 + 42205 0.68 0.342191
Target:  5'- cCAGCGCCugGCCaACCaGGUCGgagaugGCGuCGGCa -3'
miRNA:   3'- -GUUGCGG--CGG-UGG-CCAGC------UGC-GCCGa -5'
19254 5' -61.6 NC_004684.1 + 33904 0.68 0.350013
Target:  5'- aCAGgGCCGCCGCCGcGUCcacCGCaGCc -3'
miRNA:   3'- -GUUgCGGCGGUGGC-CAGcu-GCGcCGa -5'
19254 5' -61.6 NC_004684.1 + 15282 0.68 0.357962
Target:  5'- -uGCGCgGUgCACCugcugggccuGGUCGACGUGGCc -3'
miRNA:   3'- guUGCGgCG-GUGG----------CCAGCUGCGCCGa -5'
19254 5' -61.6 NC_004684.1 + 41052 0.68 0.366037
Target:  5'- aAugGCCGagcgCACCGcGUCGGCaaucgGCGGCc -3'
miRNA:   3'- gUugCGGCg---GUGGC-CAGCUG-----CGCCGa -5'
19254 5' -61.6 NC_004684.1 + 20068 0.67 0.382559
Target:  5'- uCGACGCC-CaCACCGG-CGACaCGGUg -3'
miRNA:   3'- -GUUGCGGcG-GUGGCCaGCUGcGCCGa -5'
19254 5' -61.6 NC_004684.1 + 48054 0.67 0.391004
Target:  5'- uCAGCGCCucCCGCuCGGccaCGGCGgCGGCg -3'
miRNA:   3'- -GUUGCGGc-GGUG-GCCa--GCUGC-GCCGa -5'
19254 5' -61.6 NC_004684.1 + 39966 0.69 0.284199
Target:  5'- cCAAUGCCGCCACCaugcGGUCaaagaGAUGCGuCUg -3'
miRNA:   3'- -GUUGCGGCGGUGG----CCAG-----CUGCGCcGA- -5'
19254 5' -61.6 NC_004684.1 + 56613 0.7 0.264544
Target:  5'- cCGACGCCGUCGCgGGU-GuCGCgGGCa -3'
miRNA:   3'- -GUUGCGGCGGUGgCCAgCuGCG-CCGa -5'
19254 5' -61.6 NC_004684.1 + 26230 0.7 0.246007
Target:  5'- -cACcCCGCgCGCgGGUcCGGCGCGGCg -3'
miRNA:   3'- guUGcGGCG-GUGgCCA-GCUGCGCCGa -5'
19254 5' -61.6 NC_004684.1 + 44185 0.66 0.435002
Target:  5'- --cCGUCGCCACCGG-CGGCcuUGGUg -3'
miRNA:   3'- guuGCGGCGGUGGCCaGCUGc-GCCGa -5'
19254 5' -61.6 NC_004684.1 + 21571 0.66 0.44414
Target:  5'- cCGAgGCCGUCACCgGGUCaAUGCcGCa -3'
miRNA:   3'- -GUUgCGGCGGUGG-CCAGcUGCGcCGa -5'
19254 5' -61.6 NC_004684.1 + 66166 0.66 0.453386
Target:  5'- cCGACcagGCCGCCgagGCCGacgaaGUCGACGCcGCg -3'
miRNA:   3'- -GUUG---CGGCGG---UGGC-----CAGCUGCGcCGa -5'
19254 5' -61.6 NC_004684.1 + 18656 0.66 0.472185
Target:  5'- aCAugGCCugccacaucGCCACCGGcaaGCGCuGGCa -3'
miRNA:   3'- -GUugCGG---------CGGUGGCCagcUGCG-CCGa -5'
19254 5' -61.6 NC_004684.1 + 54277 0.66 0.472185
Target:  5'- aAGCuGCCGCgCugGCCGGUgGG-GCGGCg -3'
miRNA:   3'- gUUG-CGGCG-G--UGGCCAgCUgCGCCGa -5'
19254 5' -61.6 NC_004684.1 + 40791 0.75 0.121725
Target:  5'- uGACGCCGCCGCCGGUggCGAacccgcgcacaccgcCGCGcGCc -3'
miRNA:   3'- gUUGCGGCGGUGGCCA--GCU---------------GCGC-CGa -5'
19254 5' -61.6 NC_004684.1 + 49043 0.74 0.136992
Target:  5'- gCAcCG-CGCCGCCGGUCGGCuccggggGCGGCa -3'
miRNA:   3'- -GUuGCgGCGGUGGCCAGCUG-------CGCCGa -5'
19254 5' -61.6 NC_004684.1 + 17293 0.73 0.168964
Target:  5'- gGGgGCCaGCCGCCuGGUCGugGUGGaCUg -3'
miRNA:   3'- gUUgCGG-CGGUGG-CCAGCugCGCC-GA- -5'
19254 5' -61.6 NC_004684.1 + 5902 0.73 0.177828
Target:  5'- gAGCGCCGCCGCCu----GCGCGGCg -3'
miRNA:   3'- gUUGCGGCGGUGGccagcUGCGCCGa -5'
19254 5' -61.6 NC_004684.1 + 47079 0.71 0.211641
Target:  5'- gAugGCCGCCGCCGccaugguGUCGGCGCacuucucGCUg -3'
miRNA:   3'- gUugCGGCGGUGGC-------CAGCUGCGc------CGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.