Results 21 - 40 of 226 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19254 | 5' | -61.6 | NC_004684.1 | + | 54277 | 0.66 | 0.472185 |
Target: 5'- aAGCuGCCGCgCugGCCGGUgGG-GCGGCg -3' miRNA: 3'- gUUG-CGGCG-G--UGGCCAgCUgCGCCGa -5' |
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19254 | 5' | -61.6 | NC_004684.1 | + | 42001 | 0.66 | 0.472185 |
Target: 5'- ---gGCCGCCGCUGu---GCGCGGCg -3' miRNA: 3'- guugCGGCGGUGGCcagcUGCGCCGa -5' |
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19254 | 5' | -61.6 | NC_004684.1 | + | 55417 | 0.66 | 0.472185 |
Target: 5'- --uCGgUGCCGCCGGUCGcgguguGCGCcGCa -3' miRNA: 3'- guuGCgGCGGUGGCCAGC------UGCGcCGa -5' |
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19254 | 5' | -61.6 | NC_004684.1 | + | 66345 | 0.66 | 0.471236 |
Target: 5'- uGACGCCggggcggGCgGCCaGGgCGACGCGGgUg -3' miRNA: 3'- gUUGCGG-------CGgUGG-CCaGCUGCGCCgA- -5' |
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19254 | 5' | -61.6 | NC_004684.1 | + | 55703 | 0.66 | 0.462736 |
Target: 5'- cCAGCGCgacaGCCGuauCCGG-CGACGUuuGGCg -3' miRNA: 3'- -GUUGCGg---CGGU---GGCCaGCUGCG--CCGa -5' |
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19254 | 5' | -61.6 | NC_004684.1 | + | 25381 | 0.66 | 0.462736 |
Target: 5'- uCAGCGCCuacGCCGCCG--CGcACaGCGGCg -3' miRNA: 3'- -GUUGCGG---CGGUGGCcaGC-UG-CGCCGa -5' |
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19254 | 5' | -61.6 | NC_004684.1 | + | 58507 | 0.66 | 0.462736 |
Target: 5'- -cGCGCCGaCugCGGUCcagcgugccguuGGCGgCGGCg -3' miRNA: 3'- guUGCGGCgGugGCCAG------------CUGC-GCCGa -5' |
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19254 | 5' | -61.6 | NC_004684.1 | + | 56859 | 0.66 | 0.462735 |
Target: 5'- aCGAUGaaGCUACCGG-CGA-GCGGUg -3' miRNA: 3'- -GUUGCggCGGUGGCCaGCUgCGCCGa -5' |
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19254 | 5' | -61.6 | NC_004684.1 | + | 56024 | 0.66 | 0.462735 |
Target: 5'- gGACGCCaCCACCGGcaccuCGCGGg- -3' miRNA: 3'- gUUGCGGcGGUGGCCagcu-GCGCCga -5' |
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19254 | 5' | -61.6 | NC_004684.1 | + | 4762 | 0.66 | 0.462735 |
Target: 5'- -uACGCCGCCuucgugcgcgucGCCaGcaagcgccUCGGCGCGGUg -3' miRNA: 3'- guUGCGGCGG------------UGGcC--------AGCUGCGCCGa -5' |
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19254 | 5' | -61.6 | NC_004684.1 | + | 58357 | 0.66 | 0.461796 |
Target: 5'- uGGCGuuGCCgcGCCGGUUGcCGCcccgcacGGCa -3' miRNA: 3'- gUUGCggCGG--UGGCCAGCuGCG-------CCGa -5' |
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19254 | 5' | -61.6 | NC_004684.1 | + | 7573 | 0.66 | 0.453387 |
Target: 5'- uGGCGCUgguGCgGCUGGU--GCGCGGCa -3' miRNA: 3'- gUUGCGG---CGgUGGCCAgcUGCGCCGa -5' |
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19254 | 5' | -61.6 | NC_004684.1 | + | 3175 | 0.66 | 0.453386 |
Target: 5'- cCAACGCCGUguCCcagguGUCGAUcCGGCa -3' miRNA: 3'- -GUUGCGGCGguGGc----CAGCUGcGCCGa -5' |
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19254 | 5' | -61.6 | NC_004684.1 | + | 66166 | 0.66 | 0.453386 |
Target: 5'- cCGACcagGCCGCCgagGCCGacgaaGUCGACGCcGCg -3' miRNA: 3'- -GUUG---CGGCGG---UGGC-----CAGCUGCGcCGa -5' |
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19254 | 5' | -61.6 | NC_004684.1 | + | 25037 | 0.66 | 0.453386 |
Target: 5'- --uUGCUGCCuuuCCGGUUGGCGauguaGGUg -3' miRNA: 3'- guuGCGGCGGu--GGCCAGCUGCg----CCGa -5' |
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19254 | 5' | -61.6 | NC_004684.1 | + | 15118 | 0.66 | 0.444141 |
Target: 5'- --uUGCCGUCACCGG--GACGCugGGCc -3' miRNA: 3'- guuGCGGCGGUGGCCagCUGCG--CCGa -5' |
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19254 | 5' | -61.6 | NC_004684.1 | + | 18719 | 0.66 | 0.444141 |
Target: 5'- gGugGCaCGCUcucGCUGGaUGugGCGGCg -3' miRNA: 3'- gUugCG-GCGG---UGGCCaGCugCGCCGa -5' |
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19254 | 5' | -61.6 | NC_004684.1 | + | 3706 | 0.66 | 0.444141 |
Target: 5'- cCAGCGCCGCCgcgcugGCCGGUaucaACGCuucGCa -3' miRNA: 3'- -GUUGCGGCGG------UGGCCAgc--UGCGc--CGa -5' |
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19254 | 5' | -61.6 | NC_004684.1 | + | 48064 | 0.66 | 0.444141 |
Target: 5'- uGGCGguuUCGaCCACCGGUucCGGCGuCGGCc -3' miRNA: 3'- gUUGC---GGC-GGUGGCCA--GCUGC-GCCGa -5' |
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19254 | 5' | -61.6 | NC_004684.1 | + | 43856 | 0.66 | 0.44414 |
Target: 5'- cCGAUGCCGCCGa-GGUUGGugaGCaGGCUg -3' miRNA: 3'- -GUUGCGGCGGUggCCAGCUg--CG-CCGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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