miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19255 3' -55.7 NC_004684.1 + 61148 1.11 0.000966
Target:  5'- gCGACUGGGUGUACUCGGUCAGCCACCc -3'
miRNA:   3'- -GCUGACCCACAUGAGCCAGUCGGUGG- -5'
19255 3' -55.7 NC_004684.1 + 51632 0.66 0.787801
Target:  5'- uCGGCgcaccuuucGGUGUACgCGGcCAGUCGCUg -3'
miRNA:   3'- -GCUGac-------CCACAUGaGCCaGUCGGUGG- -5'
19255 3' -55.7 NC_004684.1 + 976 0.66 0.758365
Target:  5'- gCGACUccgGGGcGUuCUCGGcCAG-CACCa -3'
miRNA:   3'- -GCUGA---CCCaCAuGAGCCaGUCgGUGG- -5'
19255 3' -55.7 NC_004684.1 + 50008 0.67 0.706991
Target:  5'- uGACcGGGUGUGCgcaCcGUCGGCgGCa -3'
miRNA:   3'- gCUGaCCCACAUGa--GcCAGUCGgUGg -5'
19255 3' -55.7 NC_004684.1 + 47581 0.67 0.68588
Target:  5'- uCGGCUcaGUGUGCUCGGcgauguaGGCCGCa -3'
miRNA:   3'- -GCUGAccCACAUGAGCCag-----UCGGUGg -5'
19255 3' -55.7 NC_004684.1 + 27286 0.68 0.668846
Target:  5'- gGGCUGaucagcacccuguucGGUGgccUGCUCGGUgCGGCCAgCu -3'
miRNA:   3'- gCUGAC---------------CCAC---AUGAGCCA-GUCGGUgG- -5'
19255 3' -55.7 NC_004684.1 + 26580 0.68 0.643151
Target:  5'- uGGCgcgcgGcGGUGUGCgcgGGUUcGCCACCg -3'
miRNA:   3'- gCUGa----C-CCACAUGag-CCAGuCGGUGG- -5'
19255 3' -55.7 NC_004684.1 + 33481 0.68 0.621689
Target:  5'- gCGGCUGcGGUGgACgCGG-CGGCgGCCc -3'
miRNA:   3'- -GCUGAC-CCACaUGaGCCaGUCGgUGG- -5'
19255 3' -55.7 NC_004684.1 + 49385 0.69 0.589585
Target:  5'- cCGAUguUGccgccGUACUCGGUCAgcGCCACCa -3'
miRNA:   3'- -GCUG--ACcca--CAUGAGCCAGU--CGGUGG- -5'
19255 3' -55.7 NC_004684.1 + 37390 0.85 0.066069
Target:  5'- -cGCUGGGUGUGCUCGG-CAGCUugCc -3'
miRNA:   3'- gcUGACCCACAUGAGCCaGUCGGugG- -5'
19255 3' -55.7 NC_004684.1 + 52431 0.72 0.41863
Target:  5'- aGGCcGGGgGU-CUCGauGUCGGCCGCCa -3'
miRNA:   3'- gCUGaCCCaCAuGAGC--CAGUCGGUGG- -5'
19255 3' -55.7 NC_004684.1 + 66027 0.72 0.41863
Target:  5'- uCGGCcaGGGUGUugGCgUUGGUCAGCCagACCc -3'
miRNA:   3'- -GCUGa-CCCACA--UG-AGCCAGUCGG--UGG- -5'
19255 3' -55.7 NC_004684.1 + 36784 0.71 0.475923
Target:  5'- cCGACgcuGGUcGgcggcgGCUCGGUCAGCUACg -3'
miRNA:   3'- -GCUGac-CCA-Ca-----UGAGCCAGUCGGUGg -5'
19255 3' -55.7 NC_004684.1 + 49193 0.7 0.536854
Target:  5'- gCGGCgGcGGccUGCUCGGUCGGCCAg- -3'
miRNA:   3'- -GCUGaC-CCacAUGAGCCAGUCGGUgg -5'
19255 3' -55.7 NC_004684.1 + 11060 0.7 0.536854
Target:  5'- cCGuCUGGaGgacggcaagGUGCUCGGUUcgGGCUACCu -3'
miRNA:   3'- -GCuGACC-Ca--------CAUGAGCCAG--UCGGUGG- -5'
19255 3' -55.7 NC_004684.1 + 14096 0.66 0.787801
Target:  5'- uGACcGGGUGgug-UGGcUCAGCC-CCg -3'
miRNA:   3'- gCUGaCCCACaugaGCC-AGUCGGuGG- -5'
19255 3' -55.7 NC_004684.1 + 25712 0.73 0.349149
Target:  5'- cCGcGCUGGGUGuUGCcgaGGUCGGCCcgGCCu -3'
miRNA:   3'- -GC-UGACCCAC-AUGag-CCAGUCGG--UGG- -5'
19255 3' -55.7 NC_004684.1 + 32716 0.7 0.557784
Target:  5'- gCGuCUGGGgguUGCUCGcGUUGGCCuGCCg -3'
miRNA:   3'- -GCuGACCCac-AUGAGC-CAGUCGG-UGG- -5'
19255 3' -55.7 NC_004684.1 + 55819 0.69 0.600263
Target:  5'- gGGCUGGuGUGgaACUCGcGgUAGCCGCUg -3'
miRNA:   3'- gCUGACC-CACa-UGAGC-CaGUCGGUGG- -5'
19255 3' -55.7 NC_004684.1 + 54184 0.68 0.621689
Target:  5'- uGGCUGGucgcccGCUCGauuUCAGCCACCa -3'
miRNA:   3'- gCUGACCcaca--UGAGCc--AGUCGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.