miRNA display CGI


Results 21 - 40 of 178 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19255 5' -60.1 NC_004684.1 + 62472 0.66 0.503926
Target:  5'- -aGGUGGCCgUUGGCGacCGCCUcGaGCa -3'
miRNA:   3'- aaCCACCGG-AGCCGCauGUGGA-C-CGg -5'
19255 5' -60.1 NC_004684.1 + 22690 0.66 0.503926
Target:  5'- -aGGacaUGGCCcCGGCGgcgcaGgACgUGGCCa -3'
miRNA:   3'- aaCC---ACCGGaGCCGCa----UgUGgACCGG- -5'
19255 5' -60.1 NC_004684.1 + 26545 0.66 0.492937
Target:  5'- -cGGUcaGGCCggGGUGUACGcguuccggcgcgcCCUGGCg -3'
miRNA:   3'- aaCCA--CCGGagCCGCAUGU-------------GGACCGg -5'
19255 5' -60.1 NC_004684.1 + 60076 0.66 0.503926
Target:  5'- -cGGcGGCC-CGuGCGggccuuCACCgGGCCa -3'
miRNA:   3'- aaCCaCCGGaGC-CGCau----GUGGaCCGG- -5'
19255 5' -60.1 NC_004684.1 + 61154 0.66 0.514008
Target:  5'- -gGGUGuaCUCGGUcagcCACCcGGCCa -3'
miRNA:   3'- aaCCACcgGAGCCGcau-GUGGaCCGG- -5'
19255 5' -60.1 NC_004684.1 + 11599 0.66 0.493931
Target:  5'- -cGGUGcGCCU-GGaCGacgGCACCgagcUGGCCg -3'
miRNA:   3'- aaCCAC-CGGAgCC-GCa--UGUGG----ACCGG- -5'
19255 5' -60.1 NC_004684.1 + 44535 0.66 0.464514
Target:  5'- gUGGUGGCC-CGGaCGa--ACCcGGUCg -3'
miRNA:   3'- aACCACCGGaGCC-GCaugUGGaCCGG- -5'
19255 5' -60.1 NC_004684.1 + 2931 0.66 0.484028
Target:  5'- -aGGU-GCCUcCGGUGccgaGCACCgaGGCCa -3'
miRNA:   3'- aaCCAcCGGA-GCCGCa---UGUGGa-CCGG- -5'
19255 5' -60.1 NC_004684.1 + 9466 0.66 0.484028
Target:  5'- -cGGUcGGCaaugucaUCGGCGgucaGCCcGGCCa -3'
miRNA:   3'- aaCCA-CCGg------AGCCGCaug-UGGaCCGG- -5'
19255 5' -60.1 NC_004684.1 + 61597 0.66 0.484028
Target:  5'- -cGGUGGUCgaGGCGUcccgcccgcACACCacgcacuugGGCCa -3'
miRNA:   3'- aaCCACCGGagCCGCA---------UGUGGa--------CCGG- -5'
19255 5' -60.1 NC_004684.1 + 47645 0.66 0.503926
Target:  5'- gUGGacGGCCagugCGGCGUugGCC--GCCu -3'
miRNA:   3'- aACCa-CCGGa---GCCGCAugUGGacCGG- -5'
19255 5' -60.1 NC_004684.1 + 49112 0.66 0.484028
Target:  5'- -aGGUcGCCgUCGGCGUcgGCCUGGa- -3'
miRNA:   3'- aaCCAcCGG-AGCCGCAugUGGACCgg -5'
19255 5' -60.1 NC_004684.1 + 19717 0.66 0.493931
Target:  5'- cUGGgacGGCCacUCGGUGagcgcgGCACCUGGa- -3'
miRNA:   3'- aACCa--CCGG--AGCCGCa-----UGUGGACCgg -5'
19255 5' -60.1 NC_004684.1 + 66911 0.66 0.503926
Target:  5'- -cGGcgcGGCCUUGGCGgccACaACCUcGGCg -3'
miRNA:   3'- aaCCa--CCGGAGCCGCa--UG-UGGA-CCGg -5'
19255 5' -60.1 NC_004684.1 + 9543 0.66 0.503926
Target:  5'- cUGGUGcGCCggUUGGagccgGUGCGCCgcgaacacgUGGCCg -3'
miRNA:   3'- aACCAC-CGG--AGCCg----CAUGUGG---------ACCGG- -5'
19255 5' -60.1 NC_004684.1 + 23045 0.66 0.493931
Target:  5'- -----cGCCUUGGUG-ACgGCCUGGCCa -3'
miRNA:   3'- aaccacCGGAGCCGCaUG-UGGACCGG- -5'
19255 5' -60.1 NC_004684.1 + 52232 0.66 0.464514
Target:  5'- gUGcGUGGCggCGGCGgccagcUGCGCgCUGGCg -3'
miRNA:   3'- aAC-CACCGgaGCCGC------AUGUG-GACCGg -5'
19255 5' -60.1 NC_004684.1 + 29356 0.67 0.41853
Target:  5'- -cGGUGGaCCUguccguccccgcugaGGCGUugugGCACCagaUGGCCg -3'
miRNA:   3'- aaCCACC-GGAg--------------CCGCA----UGUGG---ACCGG- -5'
19255 5' -60.1 NC_004684.1 + 49515 0.67 0.421266
Target:  5'- -gGGUguagcGGCC-CaGCGUGCACCcggcggugugcgcggUGGCCg -3'
miRNA:   3'- aaCCA-----CCGGaGcCGCAUGUGG---------------ACCGG- -5'
19255 5' -60.1 NC_004684.1 + 44902 0.67 0.42677
Target:  5'- -aGGUGGCacgUUGGCGUcggugcGCGCCgGGUa -3'
miRNA:   3'- aaCCACCGg--AGCCGCA------UGUGGaCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.