miRNA display CGI


Results 21 - 40 of 178 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19255 5' -60.1 NC_004684.1 + 26545 0.66 0.492937
Target:  5'- -cGGUcaGGCCggGGUGUACGcguuccggcgcgcCCUGGCg -3'
miRNA:   3'- aaCCA--CCGGagCCGCAUGU-------------GGACCGg -5'
19255 5' -60.1 NC_004684.1 + 29441 0.66 0.487978
Target:  5'- -aGGacgaUGGCCUCcaccgcgucgagcagGGCGUGCAUgCUGGUg -3'
miRNA:   3'- aaCC----ACCGGAG---------------CCGCAUGUG-GACCGg -5'
19255 5' -60.1 NC_004684.1 + 49112 0.66 0.484028
Target:  5'- -aGGUcGCCgUCGGCGUcgGCCUGGa- -3'
miRNA:   3'- aaCCAcCGG-AGCCGCAugUGGACCgg -5'
19255 5' -60.1 NC_004684.1 + 46613 0.66 0.484028
Target:  5'- -cGGUGGCUUCGGgGccacCGCCUccGGUg -3'
miRNA:   3'- aaCCACCGGAGCCgCau--GUGGA--CCGg -5'
19255 5' -60.1 NC_004684.1 + 9466 0.66 0.484028
Target:  5'- -cGGUcGGCaaugucaUCGGCGgucaGCCcGGCCa -3'
miRNA:   3'- aaCCA-CCGg------AGCCGCaug-UGGaCCGG- -5'
19255 5' -60.1 NC_004684.1 + 2931 0.66 0.484028
Target:  5'- -aGGU-GCCUcCGGUGccgaGCACCgaGGCCa -3'
miRNA:   3'- aaCCAcCGGA-GCCGCa---UGUGGa-CCGG- -5'
19255 5' -60.1 NC_004684.1 + 61597 0.66 0.484028
Target:  5'- -cGGUGGUCgaGGCGUcccgcccgcACACCacgcacuugGGCCa -3'
miRNA:   3'- aaCCACCGGagCCGCA---------UGUGGa--------CCGG- -5'
19255 5' -60.1 NC_004684.1 + 53408 0.66 0.474221
Target:  5'- -aGGUGGCCgggcUGGCcUGCGCCgcgcgacuGCCa -3'
miRNA:   3'- aaCCACCGGa---GCCGcAUGUGGac------CGG- -5'
19255 5' -60.1 NC_004684.1 + 44687 0.66 0.474221
Target:  5'- ----cGGCCUUGGCcacguccUGCGCCgccggGGCCa -3'
miRNA:   3'- aaccaCCGGAGCCGc------AUGUGGa----CCGG- -5'
19255 5' -60.1 NC_004684.1 + 22937 0.66 0.474221
Target:  5'- -aGGUGGCCa--GCGUGCucAgCUGGUCg -3'
miRNA:   3'- aaCCACCGGagcCGCAUG--UgGACCGG- -5'
19255 5' -60.1 NC_004684.1 + 29584 0.66 0.474221
Target:  5'- -cGGUGGCCgcacUCGGCGaagACGacuuCCUaGGCa -3'
miRNA:   3'- aaCCACCGG----AGCCGCa--UGU----GGA-CCGg -5'
19255 5' -60.1 NC_004684.1 + 28905 0.66 0.464514
Target:  5'- -cGGUGGCCUUGcUG-ACGCCgGuGCCu -3'
miRNA:   3'- aaCCACCGGAGCcGCaUGUGGaC-CGG- -5'
19255 5' -60.1 NC_004684.1 + 58272 0.66 0.464514
Target:  5'- ---aUGGCCUCGGCGguga--UGGCCc -3'
miRNA:   3'- aaccACCGGAGCCGCauguggACCGG- -5'
19255 5' -60.1 NC_004684.1 + 44535 0.66 0.464514
Target:  5'- gUGGUGGCC-CGGaCGa--ACCcGGUCg -3'
miRNA:   3'- aACCACCGGaGCC-GCaugUGGaCCGG- -5'
19255 5' -60.1 NC_004684.1 + 52232 0.66 0.464514
Target:  5'- gUGcGUGGCggCGGCGgccagcUGCGCgCUGGCg -3'
miRNA:   3'- aAC-CACCGgaGCCGC------AUGUG-GACCGg -5'
19255 5' -60.1 NC_004684.1 + 21235 0.66 0.464514
Target:  5'- cUGGUGGCg-UGGCcgcgagguguucGUGCGCCaGGUCa -3'
miRNA:   3'- aACCACCGgaGCCG------------CAUGUGGaCCGG- -5'
19255 5' -60.1 NC_004684.1 + 8909 0.66 0.463549
Target:  5'- aUUGGUcGGCCuggcagaUCGGCGacgaggaugUGCGCCUGcauauccuGCCg -3'
miRNA:   3'- -AACCA-CCGG-------AGCCGC---------AUGUGGAC--------CGG- -5'
19255 5' -60.1 NC_004684.1 + 61953 0.67 0.454912
Target:  5'- cUGGUGcaCCggauguaaccgUCGGUGUACACCaUGaGCCa -3'
miRNA:   3'- aACCACc-GG-----------AGCCGCAUGUGG-AC-CGG- -5'
19255 5' -60.1 NC_004684.1 + 12762 0.67 0.454912
Target:  5'- ---uUGGCCcgcgCGGC-UGCGCCUgcGGCCa -3'
miRNA:   3'- aaccACCGGa---GCCGcAUGUGGA--CCGG- -5'
19255 5' -60.1 NC_004684.1 + 39658 0.67 0.454912
Target:  5'- -aGGUaccGGCCUCcGCGUgccucgugcucGCGCUcGGCCg -3'
miRNA:   3'- aaCCA---CCGGAGcCGCA-----------UGUGGaCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.