miRNA display CGI


Results 21 - 40 of 209 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19256 3' -55.9 NC_004684.1 + 40098 0.66 0.748293
Target:  5'- aGCGgC-CGAUcucguggccguaGCGGG-CGCUGGCGGc -3'
miRNA:   3'- aCGUgGuGUUA------------UGCCCuGUGGCCGCC- -5'
19256 3' -55.9 NC_004684.1 + 58786 0.66 0.748293
Target:  5'- gUGCACCGgGcuuGUuCGaGGcCACCGGCGc -3'
miRNA:   3'- -ACGUGGUgU---UAuGC-CCuGUGGCCGCc -5'
19256 3' -55.9 NC_004684.1 + 14080 0.66 0.748293
Target:  5'- aGUACgACGAccaGGGugACCgGGUGGu -3'
miRNA:   3'- aCGUGgUGUUaugCCCugUGG-CCGCC- -5'
19256 3' -55.9 NC_004684.1 + 2743 0.66 0.748293
Target:  5'- cGCGCCgacaucGCGGUGCGccacGACGCCGaCGGc -3'
miRNA:   3'- aCGUGG------UGUUAUGCc---CUGUGGCcGCC- -5'
19256 3' -55.9 NC_004684.1 + 8903 0.66 0.748293
Target:  5'- gGCGCgGCAAgaaggGCGGGcgcggcaaguucGCGCUGGCc- -3'
miRNA:   3'- aCGUGgUGUUa----UGCCC------------UGUGGCCGcc -5'
19256 3' -55.9 NC_004684.1 + 44571 0.66 0.748293
Target:  5'- cUGCACCGC----CGGGAacuGCCGGuCGa -3'
miRNA:   3'- -ACGUGGUGuuauGCCCUg--UGGCC-GCc -5'
19256 3' -55.9 NC_004684.1 + 57175 0.66 0.748293
Target:  5'- cGCGCaCGCu---CGGG-CGCaGGCGGg -3'
miRNA:   3'- aCGUG-GUGuuauGCCCuGUGgCCGCC- -5'
19256 3' -55.9 NC_004684.1 + 66745 0.66 0.748293
Target:  5'- cGCACCACccGGUACaGcACcCCGGCGa -3'
miRNA:   3'- aCGUGGUG--UUAUGcCcUGuGGCCGCc -5'
19256 3' -55.9 NC_004684.1 + 30138 0.66 0.748293
Target:  5'- gGCACCGCGcaguGUGCGcgucggccaguGGGCGaucaacgccgUCGGCGGc -3'
miRNA:   3'- aCGUGGUGU----UAUGC-----------CCUGU----------GGCCGCC- -5'
19256 3' -55.9 NC_004684.1 + 55816 0.66 0.748293
Target:  5'- aGCGCgUGCGAgcACGGGGUGCCGGUGa -3'
miRNA:   3'- aCGUG-GUGUUa-UGCCCUGUGGCCGCc -5'
19256 3' -55.9 NC_004684.1 + 951 0.66 0.748293
Target:  5'- cGCuuCGCGGgccUGCGGGuCAUUGGCGa -3'
miRNA:   3'- aCGugGUGUU---AUGCCCuGUGGCCGCc -5'
19256 3' -55.9 NC_004684.1 + 4100 0.66 0.748293
Target:  5'- cGCGCgu-GGUGCaGGGAUAcgcCCGGCGGc -3'
miRNA:   3'- aCGUGgugUUAUG-CCCUGU---GGCCGCC- -5'
19256 3' -55.9 NC_004684.1 + 2008 0.66 0.742196
Target:  5'- aGCGCCugGGUGgGGGuccgcgaugaccgucGCcCUGGUGGc -3'
miRNA:   3'- aCGUGGugUUAUgCCC---------------UGuGGCCGCC- -5'
19256 3' -55.9 NC_004684.1 + 11845 0.66 0.742196
Target:  5'- gGCGCgACuucggcaACGGGuacgaacucguggcgGCGCUGGCGGu -3'
miRNA:   3'- aCGUGgUGuua----UGCCC---------------UGUGGCCGCC- -5'
19256 3' -55.9 NC_004684.1 + 56599 0.66 0.738109
Target:  5'- aUGcCGCUACGGUGCc-GACGCCGucGCGGg -3'
miRNA:   3'- -AC-GUGGUGUUAUGccCUGUGGC--CGCC- -5'
19256 3' -55.9 NC_004684.1 + 42893 0.66 0.738109
Target:  5'- cGCGCgGCccUGCGGcaccGCcCCGGCGGu -3'
miRNA:   3'- aCGUGgUGuuAUGCCc---UGuGGCCGCC- -5'
19256 3' -55.9 NC_004684.1 + 50601 0.66 0.738109
Target:  5'- gGguCgGCGGUcgGCGGGuCAUCGGCGu -3'
miRNA:   3'- aCguGgUGUUA--UGCCCuGUGGCCGCc -5'
19256 3' -55.9 NC_004684.1 + 54305 0.66 0.738109
Target:  5'- gUGCACCGCGcgAacCGGGgcGCACCGaGuCGa -3'
miRNA:   3'- -ACGUGGUGUuaU--GCCC--UGUGGC-C-GCc -5'
19256 3' -55.9 NC_004684.1 + 57242 0.66 0.738109
Target:  5'- cGCcCCACcuggGCGGGcgGCACCGuCGGc -3'
miRNA:   3'- aCGuGGUGuua-UGCCC--UGUGGCcGCC- -5'
19256 3' -55.9 NC_004684.1 + 32079 0.66 0.737085
Target:  5'- cGCACCGCGuc-UGGGugAgcguuggCCaGGCGGu -3'
miRNA:   3'- aCGUGGUGUuauGCCCugU-------GG-CCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.