miRNA display CGI


Results 41 - 60 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19256 5' -63.1 NC_004684.1 + 12070 0.67 0.292282
Target:  5'- gGCCGCCgagcgcgacgaGGUGCUggcccgCGCGgcgGCCAUCa- -3'
miRNA:   3'- gCGGCGG-----------CCACGA------GCGCa--CGGUGGau -5'
19256 5' -63.1 NC_004684.1 + 7708 0.67 0.299255
Target:  5'- cCGUCGCCGuGgcgcugGC-CGUGaGCCACCUGa -3'
miRNA:   3'- -GCGGCGGC-Ca-----CGaGCGCaCGGUGGAU- -5'
19256 5' -63.1 NC_004684.1 + 25126 0.68 0.278719
Target:  5'- uGCCcagguGUCGGUcuuGCUCGCGUcCCACCa- -3'
miRNA:   3'- gCGG-----CGGCCA---CGAGCGCAcGGUGGau -5'
19256 5' -63.1 NC_004684.1 + 25449 0.68 0.272128
Target:  5'- gGCCGuuGGUGC-CGCcguUGaCCGCCUu -3'
miRNA:   3'- gCGGCggCCACGaGCGc--AC-GGUGGAu -5'
19256 5' -63.1 NC_004684.1 + 22853 0.68 0.265662
Target:  5'- uGCCGaCCGG-GUUCGUccggGCCACCa- -3'
miRNA:   3'- gCGGC-GGCCaCGAGCGca--CGGUGGau -5'
19256 5' -63.1 NC_004684.1 + 28571 0.68 0.285437
Target:  5'- cCGCCaCCGGUGUgcgGCG-GCUGCCUGc -3'
miRNA:   3'- -GCGGcGGCCACGag-CGCaCGGUGGAU- -5'
19256 5' -63.1 NC_004684.1 + 17839 0.68 0.253104
Target:  5'- aCGCCGCUGGcaagGUgUGCGUcaccgaccgcacGCCGCCUGa -3'
miRNA:   3'- -GCGGCGGCCa---CGaGCGCA------------CGGUGGAU- -5'
19256 5' -63.1 NC_004684.1 + 4419 0.68 0.259321
Target:  5'- gGCCGCCGGaacaacgCGCGgGCCugCUGg -3'
miRNA:   3'- gCGGCGGCCacga---GCGCaCGGugGAU- -5'
19256 5' -63.1 NC_004684.1 + 13282 0.68 0.259321
Target:  5'- gGCCGCCGGUgGCUggUGCGcGCCGUCg- -3'
miRNA:   3'- gCGGCGGCCA-CGA--GCGCaCGGUGGau -5'
19256 5' -63.1 NC_004684.1 + 26582 0.68 0.265662
Target:  5'- gCGCgCGgCGGUGUgCGCGgguucGCCACCg- -3'
miRNA:   3'- -GCG-GCgGCCACGaGCGCa----CGGUGGau -5'
19256 5' -63.1 NC_004684.1 + 57942 0.68 0.272127
Target:  5'- cCGaCCGCCugcGGUGCUCGC-UGCgGCUg- -3'
miRNA:   3'- -GC-GGCGG---CCACGAGCGcACGgUGGau -5'
19256 5' -63.1 NC_004684.1 + 20343 0.68 0.278719
Target:  5'- gCGUCGcCCGGUGCaccgucacCGCGcagGCCACCc- -3'
miRNA:   3'- -GCGGC-GGCCACGa-------GCGCa--CGGUGGau -5'
19256 5' -63.1 NC_004684.1 + 49048 0.68 0.265662
Target:  5'- gCGCCGCCGGUcgGCUC-CGgggGCggCACCg- -3'
miRNA:   3'- -GCGGCGGCCA--CGAGcGCa--CG--GUGGau -5'
19256 5' -63.1 NC_004684.1 + 45166 0.68 0.265662
Target:  5'- uCG-CGCgGGUGCcgUCGCGcagggagGCCACCUGc -3'
miRNA:   3'- -GCgGCGgCCACG--AGCGCa------CGGUGGAU- -5'
19256 5' -63.1 NC_004684.1 + 65772 0.68 0.285437
Target:  5'- cCGCgCGCCGGUGggCGCGcgcacgGCgACCg- -3'
miRNA:   3'- -GCG-GCGGCCACgaGCGCa-----CGgUGGau -5'
19256 5' -63.1 NC_004684.1 + 11154 0.68 0.285437
Target:  5'- gCGCCGUCGGUGgaCcUG-GCCGCCa- -3'
miRNA:   3'- -GCGGCGGCCACgaGcGCaCGGUGGau -5'
19256 5' -63.1 NC_004684.1 + 10136 0.69 0.229457
Target:  5'- aCGCCGCUGaccucGUGCUCaGCcaGCCGCCg- -3'
miRNA:   3'- -GCGGCGGC-----CACGAG-CGcaCGGUGGau -5'
19256 5' -63.1 NC_004684.1 + 4035 0.69 0.229457
Target:  5'- gGCCGCuCGGUGCgcuggGCG-GUCACCg- -3'
miRNA:   3'- gCGGCG-GCCACGag---CGCaCGGUGGau -5'
19256 5' -63.1 NC_004684.1 + 40544 0.69 0.229457
Target:  5'- uGCuCGCUGGUGCUCGaccgGuCCACCa- -3'
miRNA:   3'- gCG-GCGGCCACGAGCgca-C-GGUGGau -5'
19256 5' -63.1 NC_004684.1 + 51611 0.69 0.241039
Target:  5'- aCGuuGCCGGUG-UCGCcgccgcgauagGUGCCGCUg- -3'
miRNA:   3'- -GCggCGGCCACgAGCG-----------CACGGUGGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.