Results 81 - 86 of 86 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
19256 | 5' | -63.1 | NC_004684.1 | + | 47326 | 0.74 | 0.111498 |
Target: 5'- uGUCGCCGGUGUggGCGUcgagcaugGCCACCa- -3' miRNA: 3'- gCGGCGGCCACGagCGCA--------CGGUGGau -5' |
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19256 | 5' | -63.1 | NC_004684.1 | + | 9852 | 0.76 | 0.078631 |
Target: 5'- cCGCCGCCGGUGa--GC-UGCCGCCg- -3' miRNA: 3'- -GCGGCGGCCACgagCGcACGGUGGau -5' |
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19256 | 5' | -63.1 | NC_004684.1 | + | 1571 | 0.76 | 0.068641 |
Target: 5'- aGCCGCCGGUGcCUC-CGgGUCACCUGc -3' miRNA: 3'- gCGGCGGCCAC-GAGcGCaCGGUGGAU- -5' |
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19256 | 5' | -63.1 | NC_004684.1 | + | 48972 | 0.79 | 0.041873 |
Target: 5'- gGCCGCCGGUGCgccCGCcggGCCGCCg- -3' miRNA: 3'- gCGGCGGCCACGa--GCGca-CGGUGGau -5' |
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19256 | 5' | -63.1 | NC_004684.1 | + | 42633 | 0.82 | 0.026858 |
Target: 5'- cCGCCGCCGGUGCU-G-GUGCCGCCa- -3' miRNA: 3'- -GCGGCGGCCACGAgCgCACGGUGGau -5' |
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19256 | 5' | -63.1 | NC_004684.1 | + | 61457 | 1.06 | 0.000362 |
Target: 5'- uCGCCGCCGGUGCUCGCGUGCCACCUAg -3' miRNA: 3'- -GCGGCGGCCACGAGCGCACGGUGGAU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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