Results 61 - 80 of 86 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
19256 | 5' | -63.1 | NC_004684.1 | + | 7708 | 0.67 | 0.299255 |
Target: 5'- cCGUCGCCGuGgcgcugGC-CGUGaGCCACCUGa -3' miRNA: 3'- -GCGGCGGC-Ca-----CGaGCGCaCGGUGGAU- -5' |
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19256 | 5' | -63.1 | NC_004684.1 | + | 12070 | 0.67 | 0.292282 |
Target: 5'- gGCCGCCgagcgcgacgaGGUGCUggcccgCGCGgcgGCCAUCa- -3' miRNA: 3'- gCGGCGG-----------CCACGA------GCGCa--CGGUGGau -5' |
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19256 | 5' | -63.1 | NC_004684.1 | + | 9548 | 0.67 | 0.327675 |
Target: 5'- gCGCCgguuggaGCCGGUGCgcCGCGaacacgugGCCgACCUGa -3' miRNA: 3'- -GCGG-------CGGCCACGa-GCGCa-------CGG-UGGAU- -5' |
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19256 | 5' | -63.1 | NC_004684.1 | + | 64803 | 0.67 | 0.328429 |
Target: 5'- aCGCCGuuGGUGCugucgaguUCGUGgGCCAUg-- -3' miRNA: 3'- -GCGGCggCCACG--------AGCGCaCGGUGgau -5' |
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19256 | 5' | -63.1 | NC_004684.1 | + | 9972 | 0.66 | 0.358848 |
Target: 5'- aCGCCGCCGGcacaccggucgagUGauaCGCuG-GCCGCCUGg -3' miRNA: 3'- -GCGGCGGCC-------------ACga-GCG-CaCGGUGGAU- -5' |
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19256 | 5' | -63.1 | NC_004684.1 | + | 46606 | 0.66 | 0.359653 |
Target: 5'- uGCgUGCCGGUgGCuUCGgG-GCCACCg- -3' miRNA: 3'- gCG-GCGGCCA-CG-AGCgCaCGGUGGau -5' |
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19256 | 5' | -63.1 | NC_004684.1 | + | 13934 | 0.66 | 0.359653 |
Target: 5'- cCGuuGCCGGUGCugacacUCGCGggggGCCcUCg- -3' miRNA: 3'- -GCggCGGCCACG------AGCGCa---CGGuGGau -5' |
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19256 | 5' | -63.1 | NC_004684.1 | + | 39943 | 0.66 | 0.359653 |
Target: 5'- -aCCGCCGGUGgUggcacCGCGcuccaaUGCCGCCa- -3' miRNA: 3'- gcGGCGGCCACgA-----GCGC------ACGGUGGau -5' |
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19256 | 5' | -63.1 | NC_004684.1 | + | 65432 | 0.66 | 0.367776 |
Target: 5'- gCGCugCGCUGGcgUGCggCGCGcgGCCACCg- -3' miRNA: 3'- -GCG--GCGGCC--ACGa-GCGCa-CGGUGGau -5' |
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19256 | 5' | -63.1 | NC_004684.1 | + | 14487 | 0.66 | 0.38778 |
Target: 5'- aCGCCGCC-GUGCUgGCcgGacgcuccugggugcaUGCCACCg- -3' miRNA: 3'- -GCGGCGGcCACGAgCG--C---------------ACGGUGGau -5' |
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19256 | 5' | -63.1 | NC_004684.1 | + | 62736 | 0.66 | 0.384397 |
Target: 5'- uCGUCGUgGGUGCUgGgaCGUGCCAUg-- -3' miRNA: 3'- -GCGGCGgCCACGAgC--GCACGGUGgau -5' |
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19256 | 5' | -63.1 | NC_004684.1 | + | 23212 | 0.66 | 0.381872 |
Target: 5'- gGCCGCCGGUGgcgacggcggguucCUgaaauggcucCGCGacGCCACCa- -3' miRNA: 3'- gCGGCGGCCAC--------------GA----------GCGCa-CGGUGGau -5' |
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19256 | 5' | -63.1 | NC_004684.1 | + | 49061 | 0.66 | 0.375194 |
Target: 5'- gGCUcgGCCaGGUGCUCGUcgcccacGUcGCCGCCa- -3' miRNA: 3'- gCGG--CGG-CCACGAGCG-------CA-CGGUGGau -5' |
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19256 | 5' | -63.1 | NC_004684.1 | + | 18328 | 0.66 | 0.367776 |
Target: 5'- cCGCaCGCCGGUGC-CGCccccggaGCCgACCg- -3' miRNA: 3'- -GCG-GCGGCCACGaGCGca-----CGG-UGGau -5' |
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19256 | 5' | -63.1 | NC_004684.1 | + | 22007 | 0.66 | 0.359653 |
Target: 5'- gGCCaugggGCCGGUGCUCGC---CgACCUGa -3' miRNA: 3'- gCGG-----CGGCCACGAGCGcacGgUGGAU- -5' |
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19256 | 5' | -63.1 | NC_004684.1 | + | 8132 | 0.66 | 0.358044 |
Target: 5'- aCGaCCGCguCGGUGCUCGgGUGCagcagaucgucaACCa- -3' miRNA: 3'- -GC-GGCG--GCCACGAGCgCACGg-----------UGGau -5' |
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19256 | 5' | -63.1 | NC_004684.1 | + | 2449 | 0.66 | 0.351656 |
Target: 5'- uCGcCCGCCuGGgcggccaGCUCgGCGUGCCguaccACCUGa -3' miRNA: 3'- -GC-GGCGG-CCa------CGAG-CGCACGG-----UGGAU- -5' |
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19256 | 5' | -63.1 | NC_004684.1 | + | 25439 | 0.66 | 0.351656 |
Target: 5'- uGCCGCUGGccugucggacUGCUcCG-GUGCCAUCa- -3' miRNA: 3'- gCGGCGGCC----------ACGA-GCgCACGGUGGau -5' |
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19256 | 5' | -63.1 | NC_004684.1 | + | 2352 | 0.66 | 0.351656 |
Target: 5'- uGCCGCCcugaGUUCGUG-GCCGCCa- -3' miRNA: 3'- gCGGCGGcca-CGAGCGCaCGGUGGau -5' |
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19256 | 5' | -63.1 | NC_004684.1 | + | 23573 | 0.66 | 0.343786 |
Target: 5'- aGCCuGCCGG-GCcgCGCGaacaccGCCGCCg- -3' miRNA: 3'- gCGG-CGGCCaCGa-GCGCa-----CGGUGGau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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