miRNA display CGI


Results 41 - 60 of 86 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19256 5' -63.1 NC_004684.1 + 20343 0.68 0.278719
Target:  5'- gCGUCGcCCGGUGCaccgucacCGCGcagGCCACCc- -3'
miRNA:   3'- -GCGGC-GGCCACGa-------GCGCa--CGGUGGau -5'
19256 5' -63.1 NC_004684.1 + 11154 0.68 0.285437
Target:  5'- gCGCCGUCGGUGgaCcUG-GCCGCCa- -3'
miRNA:   3'- -GCGGCGGCCACgaGcGCaCGGUGGau -5'
19256 5' -63.1 NC_004684.1 + 65772 0.68 0.285437
Target:  5'- cCGCgCGCCGGUGggCGCGcgcacgGCgACCg- -3'
miRNA:   3'- -GCG-GCGGCCACgaGCGCa-----CGgUGGau -5'
19256 5' -63.1 NC_004684.1 + 28571 0.68 0.285437
Target:  5'- cCGCCaCCGGUGUgcgGCG-GCUGCCUGc -3'
miRNA:   3'- -GCGGcGGCCACGag-CGCaCGGUGGAU- -5'
19256 5' -63.1 NC_004684.1 + 12070 0.67 0.292282
Target:  5'- gGCCGCCgagcgcgacgaGGUGCUggcccgCGCGgcgGCCAUCa- -3'
miRNA:   3'- gCGGCGG-----------CCACGA------GCGCa--CGGUGGau -5'
19256 5' -63.1 NC_004684.1 + 4294 0.67 0.295056
Target:  5'- uGCCGCCGGgucgccguaauguagUGCUUGCacggcggcacgGUaGCCGCCa- -3'
miRNA:   3'- gCGGCGGCC---------------ACGAGCG-----------CA-CGGUGGau -5'
19256 5' -63.1 NC_004684.1 + 7708 0.67 0.299255
Target:  5'- cCGUCGCCGuGgcgcugGC-CGUGaGCCACCUGa -3'
miRNA:   3'- -GCGGCGGC-Ca-----CGaGCGCaCGGUGGAU- -5'
19256 5' -63.1 NC_004684.1 + 51698 0.67 0.299255
Target:  5'- aCGauGCCGGUgGCgUCG-GUGCCGCCg- -3'
miRNA:   3'- -GCggCGGCCA-CG-AGCgCACGGUGGau -5'
19256 5' -63.1 NC_004684.1 + 17641 0.67 0.303501
Target:  5'- cCG-CGCUGGUGCgcuccgugccgaGCGUGCCGCUg- -3'
miRNA:   3'- -GCgGCGGCCACGag----------CGCACGGUGGau -5'
19256 5' -63.1 NC_004684.1 + 48368 0.67 0.304926
Target:  5'- gGCCGCCGGUGCcaaccCggagaccagcgaccuGCGcgagcuggccgagauUGCCGCCUAc -3'
miRNA:   3'- gCGGCGGCCACGa----G---------------CGC---------------ACGGUGGAU- -5'
19256 5' -63.1 NC_004684.1 + 53535 0.67 0.306356
Target:  5'- uGUCGUCGGUGCg-GCGUGCCu---- -3'
miRNA:   3'- gCGGCGGCCACGagCGCACGGuggau -5'
19256 5' -63.1 NC_004684.1 + 48516 0.67 0.306357
Target:  5'- aGCCGCgcUGGUGCccugagUGCG-GCCACCc- -3'
miRNA:   3'- gCGGCG--GCCACGa-----GCGCaCGGUGGau -5'
19256 5' -63.1 NC_004684.1 + 58164 0.67 0.313585
Target:  5'- gGgaGCCGGUGCgacUGUGCCGCCa- -3'
miRNA:   3'- gCggCGGCCACGagcGCACGGUGGau -5'
19256 5' -63.1 NC_004684.1 + 56806 0.67 0.313585
Target:  5'- uGCCGUCGGUGaCggaCGUG-GCCAUCg- -3'
miRNA:   3'- gCGGCGGCCAC-Ga--GCGCaCGGUGGau -5'
19256 5' -63.1 NC_004684.1 + 5964 0.67 0.320202
Target:  5'- uGCCGCCGGUGUcccguauuguggUCauguacgGCGggacggacccGCCACCUGa -3'
miRNA:   3'- gCGGCGGCCACG------------AG-------CGCa---------CGGUGGAU- -5'
19256 5' -63.1 NC_004684.1 + 23220 0.67 0.320943
Target:  5'- gCGCgCGCCGG-GUucaUCGcCGUGCCGCa-- -3'
miRNA:   3'- -GCG-GCGGCCaCG---AGC-GCACGGUGgau -5'
19256 5' -63.1 NC_004684.1 + 26063 0.67 0.320943
Target:  5'- gGCCGUCGGcGgUCGCGgUGCCguaGCCc- -3'
miRNA:   3'- gCGGCGGCCaCgAGCGC-ACGG---UGGau -5'
19256 5' -63.1 NC_004684.1 + 61359 0.67 0.320943
Target:  5'- gGCCGCgaGGcGCUgGCGgccuaaagGCCACCg- -3'
miRNA:   3'- gCGGCGg-CCaCGAgCGCa-------CGGUGGau -5'
19256 5' -63.1 NC_004684.1 + 26436 0.67 0.320943
Target:  5'- uCGCCGCCGGUgGCcCG-GUGUacggcggcaCGCCUGg -3'
miRNA:   3'- -GCGGCGGCCA-CGaGCgCACG---------GUGGAU- -5'
19256 5' -63.1 NC_004684.1 + 9548 0.67 0.327675
Target:  5'- gCGCCgguuggaGCCGGUGCgcCGCGaacacgugGCCgACCUGa -3'
miRNA:   3'- -GCGG-------CGGCCACGa-GCGCa-------CGG-UGGAU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.