Results 61 - 80 of 86 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19256 | 5' | -63.1 | NC_004684.1 | + | 10136 | 0.69 | 0.229457 |
Target: 5'- aCGCCGCUGaccucGUGCUCaGCcaGCCGCCg- -3' miRNA: 3'- -GCGGCGGC-----CACGAG-CGcaCGGUGGau -5' |
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19256 | 5' | -63.1 | NC_004684.1 | + | 40796 | 0.69 | 0.223844 |
Target: 5'- cCGCCGCCGGUgGCgaaccCGCGcacaCCGCCg- -3' miRNA: 3'- -GCGGCGGCCA-CGa----GCGCac--GGUGGau -5' |
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19256 | 5' | -63.1 | NC_004684.1 | + | 8957 | 0.69 | 0.223844 |
Target: 5'- uGCCGCCGGUggagauGCUgUGCGaGCCAUCa- -3' miRNA: 3'- gCGGCGGCCA------CGA-GCGCaCGGUGGau -5' |
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19256 | 5' | -63.1 | NC_004684.1 | + | 35661 | 0.69 | 0.218349 |
Target: 5'- gGCCGUCGGcgGCggUGUGUcGCCACCg- -3' miRNA: 3'- gCGGCGGCCa-CGa-GCGCA-CGGUGGau -5' |
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19256 | 5' | -63.1 | NC_004684.1 | + | 30176 | 0.69 | 0.218348 |
Target: 5'- aCGCCGUCGGcggcgaGCUgGUG-GCCACCa- -3' miRNA: 3'- -GCGGCGGCCa-----CGAgCGCaCGGUGGau -5' |
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19256 | 5' | -63.1 | NC_004684.1 | + | 38101 | 0.69 | 0.217805 |
Target: 5'- cCGCCGUCGGaGUUCGCgGUGCCggagcaaguggagGCCg- -3' miRNA: 3'- -GCGGCGGCCaCGAGCG-CACGG-------------UGGau -5' |
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19256 | 5' | -63.1 | NC_004684.1 | + | 55412 | 0.7 | 0.212969 |
Target: 5'- uGCCGUCGGUGCcgccggUCGCGgUGUgCGCCg- -3' miRNA: 3'- gCGGCGGCCACG------AGCGC-ACG-GUGGau -5' |
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19256 | 5' | -63.1 | NC_004684.1 | + | 48666 | 0.7 | 0.207703 |
Target: 5'- aCGCCGCCacauccaGCgagaGCGUGCCACCg- -3' miRNA: 3'- -GCGGCGGcca----CGag--CGCACGGUGGau -5' |
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19256 | 5' | -63.1 | NC_004684.1 | + | 55740 | 0.7 | 0.20255 |
Target: 5'- gGCCGCC-GUGCUgGCGUgGCCgauGCCg- -3' miRNA: 3'- gCGGCGGcCACGAgCGCA-CGG---UGGau -5' |
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19256 | 5' | -63.1 | NC_004684.1 | + | 56590 | 0.7 | 0.197509 |
Target: 5'- aGCCGCCGGaUGC-CGCuacgGUGCCgacGCCg- -3' miRNA: 3'- gCGGCGGCC-ACGaGCG----CACGG---UGGau -5' |
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19256 | 5' | -63.1 | NC_004684.1 | + | 19271 | 0.7 | 0.192577 |
Target: 5'- uGCCGCCGGaGC-CG-GaGCCACCUGg -3' miRNA: 3'- gCGGCGGCCaCGaGCgCaCGGUGGAU- -5' |
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19256 | 5' | -63.1 | NC_004684.1 | + | 37630 | 0.7 | 0.187754 |
Target: 5'- aCGCCGUCGGUGCgcugGCcaugGCCGCCc- -3' miRNA: 3'- -GCGGCGGCCACGag--CGca--CGGUGGau -5' |
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19256 | 5' | -63.1 | NC_004684.1 | + | 748 | 0.71 | 0.178426 |
Target: 5'- cCGCCGCCGaG-GCcaUCGUG-GCCACCa- -3' miRNA: 3'- -GCGGCGGC-CaCG--AGCGCaCGGUGGau -5' |
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19256 | 5' | -63.1 | NC_004684.1 | + | 39670 | 0.71 | 0.178426 |
Target: 5'- cCGCgUGCCucGUGCUCGCGcucgGCCGCCg- -3' miRNA: 3'- -GCG-GCGGc-CACGAGCGCa---CGGUGGau -5' |
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19256 | 5' | -63.1 | NC_004684.1 | + | 59403 | 0.71 | 0.160997 |
Target: 5'- uCGCUGCacuugcaGGUGUUgCGCacGUGCCGCCUGg -3' miRNA: 3'- -GCGGCGg------CCACGA-GCG--CACGGUGGAU- -5' |
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19256 | 5' | -63.1 | NC_004684.1 | + | 63850 | 0.71 | 0.160997 |
Target: 5'- aCGCUGUCGGUGCcacgugCGCGgugGCgGCCUu -3' miRNA: 3'- -GCGGCGGCCACGa-----GCGCa--CGgUGGAu -5' |
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19256 | 5' | -63.1 | NC_004684.1 | + | 25785 | 0.71 | 0.156887 |
Target: 5'- gGCCGCCGGa-CUCGUG-GCCgACCUGc -3' miRNA: 3'- gCGGCGGCCacGAGCGCaCGG-UGGAU- -5' |
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19256 | 5' | -63.1 | NC_004684.1 | + | 20232 | 0.72 | 0.145118 |
Target: 5'- cCGCCGCuaCGGUGCUCcUGggcaccgggGCCGCCUAc -3' miRNA: 3'- -GCGGCG--GCCACGAGcGCa--------CGGUGGAU- -5' |
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19256 | 5' | -63.1 | NC_004684.1 | + | 12883 | 0.72 | 0.134161 |
Target: 5'- cCGCCGCCGGggaGCcUGCGcucGCCGCCa- -3' miRNA: 3'- -GCGGCGGCCa--CGaGCGCa--CGGUGGau -5' |
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19256 | 5' | -63.1 | NC_004684.1 | + | 7331 | 0.73 | 0.130681 |
Target: 5'- gGCCGCCGG-GC-CGCGcGCCACg-- -3' miRNA: 3'- gCGGCGGCCaCGaGCGCaCGGUGgau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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