miRNA display CGI


Results 21 - 40 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19256 5' -63.1 NC_004684.1 + 48972 0.79 0.041873
Target:  5'- gGCCGCCGGUGCgccCGCcggGCCGCCg- -3'
miRNA:   3'- gCGGCGGCCACGa--GCGca-CGGUGGau -5'
19256 5' -63.1 NC_004684.1 + 48666 0.7 0.207703
Target:  5'- aCGCCGCCacauccaGCgagaGCGUGCCACCg- -3'
miRNA:   3'- -GCGGCGGcca----CGag--CGCACGGUGGau -5'
19256 5' -63.1 NC_004684.1 + 48516 0.67 0.306357
Target:  5'- aGCCGCgcUGGUGCccugagUGCG-GCCACCc- -3'
miRNA:   3'- gCGGCG--GCCACGa-----GCGCaCGGUGGau -5'
19256 5' -63.1 NC_004684.1 + 48368 0.67 0.304926
Target:  5'- gGCCGCCGGUGCcaaccCggagaccagcgaccuGCGcgagcuggccgagauUGCCGCCUAc -3'
miRNA:   3'- gCGGCGGCCACGa----G---------------CGC---------------ACGGUGGAU- -5'
19256 5' -63.1 NC_004684.1 + 47326 0.74 0.111498
Target:  5'- uGUCGCCGGUGUggGCGUcgagcaugGCCACCa- -3'
miRNA:   3'- gCGGCGGCCACGagCGCA--------CGGUGGau -5'
19256 5' -63.1 NC_004684.1 + 46606 0.66 0.359653
Target:  5'- uGCgUGCCGGUgGCuUCGgG-GCCACCg- -3'
miRNA:   3'- gCG-GCGGCCA-CG-AGCgCaCGGUGGau -5'
19256 5' -63.1 NC_004684.1 + 45166 0.68 0.265662
Target:  5'- uCG-CGCgGGUGCcgUCGCGcagggagGCCACCUGc -3'
miRNA:   3'- -GCgGCGgCCACG--AGCGCa------CGGUGGAU- -5'
19256 5' -63.1 NC_004684.1 + 42633 0.82 0.026858
Target:  5'- cCGCCGCCGGUGCU-G-GUGCCGCCa- -3'
miRNA:   3'- -GCGGCGGCCACGAgCgCACGGUGGau -5'
19256 5' -63.1 NC_004684.1 + 42327 0.66 0.36046
Target:  5'- aCGuuGCCGGUGCgCGCGaacuucuggagcugcGCCACg-- -3'
miRNA:   3'- -GCggCGGCCACGaGCGCa--------------CGGUGgau -5'
19256 5' -63.1 NC_004684.1 + 41567 0.67 0.336044
Target:  5'- gGCCGCCGaUGC-CGUucugGCCGCCa- -3'
miRNA:   3'- gCGGCGGCcACGaGCGca--CGGUGGau -5'
19256 5' -63.1 NC_004684.1 + 40930 0.67 0.32843
Target:  5'- aCGCUGUCGcG-GCcagGCGUGCCGCCg- -3'
miRNA:   3'- -GCGGCGGC-CaCGag-CGCACGGUGGau -5'
19256 5' -63.1 NC_004684.1 + 40796 0.69 0.223844
Target:  5'- cCGCCGCCGGUgGCgaaccCGCGcacaCCGCCg- -3'
miRNA:   3'- -GCGGCGGCCA-CGa----GCGCac--GGUGGau -5'
19256 5' -63.1 NC_004684.1 + 40544 0.69 0.229457
Target:  5'- uGCuCGCUGGUGCUCGaccgGuCCACCa- -3'
miRNA:   3'- gCG-GCGGCCACGAGCgca-C-GGUGGau -5'
19256 5' -63.1 NC_004684.1 + 39943 0.66 0.359653
Target:  5'- -aCCGCCGGUGgUggcacCGCGcuccaaUGCCGCCa- -3'
miRNA:   3'- gcGGCGGCCACgA-----GCGC------ACGGUGGau -5'
19256 5' -63.1 NC_004684.1 + 39670 0.71 0.178426
Target:  5'- cCGCgUGCCucGUGCUCGCGcucgGCCGCCg- -3'
miRNA:   3'- -GCG-GCGGc-CACGAGCGCa---CGGUGGau -5'
19256 5' -63.1 NC_004684.1 + 38101 0.69 0.217805
Target:  5'- cCGCCGUCGGaGUUCGCgGUGCCggagcaaguggagGCCg- -3'
miRNA:   3'- -GCGGCGGCCaCGAGCG-CACGG-------------UGGau -5'
19256 5' -63.1 NC_004684.1 + 37630 0.7 0.187754
Target:  5'- aCGCCGUCGGUGCgcugGCcaugGCCGCCc- -3'
miRNA:   3'- -GCGGCGGCCACGag--CGca--CGGUGGau -5'
19256 5' -63.1 NC_004684.1 + 37100 0.67 0.336812
Target:  5'- uGCUGCggagaacguugaggaGG-GCUgGCGUGCCGCCa- -3'
miRNA:   3'- gCGGCGg--------------CCaCGAgCGCACGGUGGau -5'
19256 5' -63.1 NC_004684.1 + 35661 0.69 0.218349
Target:  5'- gGCCGUCGGcgGCggUGUGUcGCCACCg- -3'
miRNA:   3'- gCGGCGGCCa-CGa-GCGCA-CGGUGGau -5'
19256 5' -63.1 NC_004684.1 + 30176 0.69 0.218348
Target:  5'- aCGCCGUCGGcggcgaGCUgGUG-GCCACCa- -3'
miRNA:   3'- -GCGGCGGCCa-----CGAgCGCaCGGUGGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.