Results 41 - 60 of 86 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19256 | 5' | -63.1 | NC_004684.1 | + | 28571 | 0.68 | 0.285437 |
Target: 5'- cCGCCaCCGGUGUgcgGCG-GCUGCCUGc -3' miRNA: 3'- -GCGGcGGCCACGag-CGCaCGGUGGAU- -5' |
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19256 | 5' | -63.1 | NC_004684.1 | + | 26582 | 0.68 | 0.265662 |
Target: 5'- gCGCgCGgCGGUGUgCGCGgguucGCCACCg- -3' miRNA: 3'- -GCG-GCgGCCACGaGCGCa----CGGUGGau -5' |
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19256 | 5' | -63.1 | NC_004684.1 | + | 26436 | 0.67 | 0.320943 |
Target: 5'- uCGCCGCCGGUgGCcCG-GUGUacggcggcaCGCCUGg -3' miRNA: 3'- -GCGGCGGCCA-CGaGCgCACG---------GUGGAU- -5' |
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19256 | 5' | -63.1 | NC_004684.1 | + | 26063 | 0.67 | 0.320943 |
Target: 5'- gGCCGUCGGcGgUCGCGgUGCCguaGCCc- -3' miRNA: 3'- gCGGCGGCCaCgAGCGC-ACGG---UGGau -5' |
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19256 | 5' | -63.1 | NC_004684.1 | + | 25785 | 0.71 | 0.156887 |
Target: 5'- gGCCGCCGGa-CUCGUG-GCCgACCUGc -3' miRNA: 3'- gCGGCGGCCacGAGCGCaCGG-UGGAU- -5' |
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19256 | 5' | -63.1 | NC_004684.1 | + | 25449 | 0.68 | 0.272128 |
Target: 5'- gGCCGuuGGUGC-CGCcguUGaCCGCCUu -3' miRNA: 3'- gCGGCggCCACGaGCGc--AC-GGUGGAu -5' |
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19256 | 5' | -63.1 | NC_004684.1 | + | 25439 | 0.66 | 0.351656 |
Target: 5'- uGCCGCUGGccugucggacUGCUcCG-GUGCCAUCa- -3' miRNA: 3'- gCGGCGGCC----------ACGA-GCgCACGGUGGau -5' |
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19256 | 5' | -63.1 | NC_004684.1 | + | 25126 | 0.68 | 0.278719 |
Target: 5'- uGCCcagguGUCGGUcuuGCUCGCGUcCCACCa- -3' miRNA: 3'- gCGG-----CGGCCA---CGAGCGCAcGGUGGau -5' |
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19256 | 5' | -63.1 | NC_004684.1 | + | 23573 | 0.66 | 0.343786 |
Target: 5'- aGCCuGCCGG-GCcgCGCGaacaccGCCGCCg- -3' miRNA: 3'- gCGG-CGGCCaCGa-GCGCa-----CGGUGGau -5' |
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19256 | 5' | -63.1 | NC_004684.1 | + | 23220 | 0.67 | 0.320943 |
Target: 5'- gCGCgCGCCGG-GUucaUCGcCGUGCCGCa-- -3' miRNA: 3'- -GCG-GCGGCCaCG---AGC-GCACGGUGgau -5' |
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19256 | 5' | -63.1 | NC_004684.1 | + | 23212 | 0.66 | 0.381872 |
Target: 5'- gGCCGCCGGUGgcgacggcggguucCUgaaauggcucCGCGacGCCACCa- -3' miRNA: 3'- gCGGCGGCCAC--------------GA----------GCGCa-CGGUGGau -5' |
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19256 | 5' | -63.1 | NC_004684.1 | + | 22853 | 0.68 | 0.265662 |
Target: 5'- uGCCGaCCGG-GUUCGUccggGCCACCa- -3' miRNA: 3'- gCGGC-GGCCaCGAGCGca--CGGUGGau -5' |
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19256 | 5' | -63.1 | NC_004684.1 | + | 22007 | 0.66 | 0.359653 |
Target: 5'- gGCCaugggGCCGGUGCUCGC---CgACCUGa -3' miRNA: 3'- gCGG-----CGGCCACGAGCGcacGgUGGAU- -5' |
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19256 | 5' | -63.1 | NC_004684.1 | + | 21245 | 0.66 | 0.343786 |
Target: 5'- gGCCGCgaGGUGUUCGUGcGCCAg--- -3' miRNA: 3'- gCGGCGg-CCACGAGCGCaCGGUggau -5' |
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19256 | 5' | -63.1 | NC_004684.1 | + | 20343 | 0.68 | 0.278719 |
Target: 5'- gCGUCGcCCGGUGCaccgucacCGCGcagGCCACCc- -3' miRNA: 3'- -GCGGC-GGCCACGa-------GCGCa--CGGUGGau -5' |
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19256 | 5' | -63.1 | NC_004684.1 | + | 20232 | 0.72 | 0.145118 |
Target: 5'- cCGCCGCuaCGGUGCUCcUGggcaccgggGCCGCCUAc -3' miRNA: 3'- -GCGGCG--GCCACGAGcGCa--------CGGUGGAU- -5' |
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19256 | 5' | -63.1 | NC_004684.1 | + | 19271 | 0.7 | 0.192577 |
Target: 5'- uGCCGCCGGaGC-CG-GaGCCACCUGg -3' miRNA: 3'- gCGGCGGCCaCGaGCgCaCGGUGGAU- -5' |
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19256 | 5' | -63.1 | NC_004684.1 | + | 18328 | 0.66 | 0.367776 |
Target: 5'- cCGCaCGCCGGUGC-CGCccccggaGCCgACCg- -3' miRNA: 3'- -GCG-GCGGCCACGaGCGca-----CGG-UGGau -5' |
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19256 | 5' | -63.1 | NC_004684.1 | + | 17839 | 0.68 | 0.253104 |
Target: 5'- aCGCCGCUGGcaagGUgUGCGUcaccgaccgcacGCCGCCUGa -3' miRNA: 3'- -GCGGCGGCCa---CGaGCGCA------------CGGUGGAU- -5' |
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19256 | 5' | -63.1 | NC_004684.1 | + | 17641 | 0.67 | 0.303501 |
Target: 5'- cCG-CGCUGGUGCgcuccgugccgaGCGUGCCGCUg- -3' miRNA: 3'- -GCgGCGGCCACGag----------CGCACGGUGGau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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