miRNA display CGI


Results 21 - 40 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19256 5' -63.1 NC_004684.1 + 17641 0.67 0.303501
Target:  5'- cCG-CGCUGGUGCgcuccgugccgaGCGUGCCGCUg- -3'
miRNA:   3'- -GCgGCGGCCACGag----------CGCACGGUGGau -5'
19256 5' -63.1 NC_004684.1 + 25126 0.68 0.278719
Target:  5'- uGCCcagguGUCGGUcuuGCUCGCGUcCCACCa- -3'
miRNA:   3'- gCGG-----CGGCCA---CGAGCGCAcGGUGGau -5'
19256 5' -63.1 NC_004684.1 + 35661 0.69 0.218349
Target:  5'- gGCCGUCGGcgGCggUGUGUcGCCACCg- -3'
miRNA:   3'- gCGGCGGCCa-CGa-GCGCA-CGGUGGau -5'
19256 5' -63.1 NC_004684.1 + 20232 0.72 0.145118
Target:  5'- cCGCCGCuaCGGUGCUCcUGggcaccgggGCCGCCUAc -3'
miRNA:   3'- -GCGGCG--GCCACGAGcGCa--------CGGUGGAU- -5'
19256 5' -63.1 NC_004684.1 + 39943 0.66 0.359653
Target:  5'- -aCCGCCGGUGgUggcacCGCGcuccaaUGCCGCCa- -3'
miRNA:   3'- gcGGCGGCCACgA-----GCGC------ACGGUGGau -5'
19256 5' -63.1 NC_004684.1 + 23220 0.67 0.320943
Target:  5'- gCGCgCGCCGG-GUucaUCGcCGUGCCGCa-- -3'
miRNA:   3'- -GCG-GCGGCCaCG---AGC-GCACGGUGgau -5'
19256 5' -63.1 NC_004684.1 + 49048 0.68 0.265662
Target:  5'- gCGCCGCCGGUcgGCUC-CGgggGCggCACCg- -3'
miRNA:   3'- -GCGGCGGCCA--CGAGcGCa--CG--GUGGau -5'
19256 5' -63.1 NC_004684.1 + 7331 0.73 0.130681
Target:  5'- gGCCGCCGG-GC-CGCGcGCCACg-- -3'
miRNA:   3'- gCGGCGGCCaCGaGCGCaCGGUGgau -5'
19256 5' -63.1 NC_004684.1 + 61359 0.67 0.320943
Target:  5'- gGCCGCgaGGcGCUgGCGgccuaaagGCCACCg- -3'
miRNA:   3'- gCGGCGg-CCaCGAgCGCa-------CGGUGGau -5'
19256 5' -63.1 NC_004684.1 + 1571 0.76 0.068641
Target:  5'- aGCCGCCGGUGcCUC-CGgGUCACCUGc -3'
miRNA:   3'- gCGGCGGCCAC-GAGcGCaCGGUGGAU- -5'
19256 5' -63.1 NC_004684.1 + 25449 0.68 0.272128
Target:  5'- gGCCGuuGGUGC-CGCcguUGaCCGCCUu -3'
miRNA:   3'- gCGGCggCCACGaGCGc--AC-GGUGGAu -5'
19256 5' -63.1 NC_004684.1 + 48368 0.67 0.304926
Target:  5'- gGCCGCCGGUGCcaaccCggagaccagcgaccuGCGcgagcuggccgagauUGCCGCCUAc -3'
miRNA:   3'- gCGGCGGCCACGa----G---------------CGC---------------ACGGUGGAU- -5'
19256 5' -63.1 NC_004684.1 + 51611 0.69 0.241039
Target:  5'- aCGuuGCCGGUG-UCGCcgccgcgauagGUGCCGCUg- -3'
miRNA:   3'- -GCggCGGCCACgAGCG-----------CACGGUGGau -5'
19256 5' -63.1 NC_004684.1 + 40796 0.69 0.223844
Target:  5'- cCGCCGCCGGUgGCgaaccCGCGcacaCCGCCg- -3'
miRNA:   3'- -GCGGCGGCCA-CGa----GCGCac--GGUGGau -5'
19256 5' -63.1 NC_004684.1 + 55740 0.7 0.20255
Target:  5'- gGCCGCC-GUGCUgGCGUgGCCgauGCCg- -3'
miRNA:   3'- gCGGCGGcCACGAgCGCA-CGG---UGGau -5'
19256 5' -63.1 NC_004684.1 + 25785 0.71 0.156887
Target:  5'- gGCCGCCGGa-CUCGUG-GCCgACCUGc -3'
miRNA:   3'- gCGGCGGCCacGAGCGCaCGG-UGGAU- -5'
19256 5' -63.1 NC_004684.1 + 9665 0.66 0.384397
Target:  5'- uGCCGCCuGg----GCGUGCCACCa- -3'
miRNA:   3'- gCGGCGGcCacgagCGCACGGUGGau -5'
19256 5' -63.1 NC_004684.1 + 42327 0.66 0.36046
Target:  5'- aCGuuGCCGGUGCgCGCGaacuucuggagcugcGCCACg-- -3'
miRNA:   3'- -GCggCGGCCACGaGCGCa--------------CGGUGgau -5'
19256 5' -63.1 NC_004684.1 + 9972 0.66 0.358848
Target:  5'- aCGCCGCCGGcacaccggucgagUGauaCGCuG-GCCGCCUGg -3'
miRNA:   3'- -GCGGCGGCC-------------ACga-GCG-CaCGGUGGAU- -5'
19256 5' -63.1 NC_004684.1 + 26063 0.67 0.320943
Target:  5'- gGCCGUCGGcGgUCGCGgUGCCguaGCCc- -3'
miRNA:   3'- gCGGCGGCCaCgAGCGC-ACGG---UGGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.